Gm11841 Pseudogene Detail

Summary

• Symbol
  Gm11841
• Name
  predicted gene 11841

• Feature Type
  pseudogene
• IDs
  MGI:3651164
  NCBI Gene: 623671
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:12125290-12127252 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 5.58 cM

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651164	pseudogene	Chr4:12125090-12127449 (+)
129S1/SvImJ	ENSMUSG00200001403	pseudogene	Chr4:8764087-8766049 (+)
A/J	ENSMUSG00195002905	pseudogene	Chr4:9220812-9222774 (+)
AKR/J	ENSMUSG00220001374	pseudogene	Chr4:8958731-8960693 (+)
BALB/cJ	ENSMUSG00180004647	pseudogene	Chr4:8725962-8727924 (+)
C3H/HeJ	ENSMUSG00175017766	pseudogene	Chr4:9253980-9255942 (+)
C57BL/6NJ	ENSMUSG00215004618	pseudogene	Chr4:8870742-8872704 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027176	pseudogene	Chr4:8944131-8946093 (+)
CAST/EiJ	ENSTCUG00005026192	pseudogene	Chr4:8954899-8956861 (+)
CBA/J	ENSMUSG00210002598	pseudogene	Chr4:8991708-8993670 (+)
DBA/2J	ENSMUSG00185002588	pseudogene	Chr4:9101862-9103824 (+)
FVB/NJ	ENSMUSG00205003563	pseudogene	Chr4:8783784-8785746 (+)
JF1/MsJ	ENSUMUG00000003358	pseudogene	Chr4:9206623-9208585 (+)
LP/J	ENSMUSG00230001176	pseudogene	Chr4:12275476-12277438 (+)
NOD/ShiLtJ	ENSMUSG00190013870	pseudogene	Chr4:8848307-8850269 (+)
NZO/HlLtJ	ENSMUSG00225008457	pseudogene	Chr4:16275855-16277817 (+)
PWK/PhJ	ENSLUMG00010005924	pseudogene	Chr4:8680252-8682214 (+)
SPRET/EiJ	ENSMSPG00010003246	pseudogene	Chr4:9064710-9066668 (+)
WSB/EiJ	ENSIUOG00005014132	pseudogene	Chr4:8764206-8766822 (+)

Homology

• Gene Tree
  Gm11841
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000081593 (Evidence)
• NCBI Gene
  623671

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081593	Ensembl Gene Model | MGI Sequence Detail	1963	C57BL/6J
transcript	ENSMUST00000117060	Ensembl | MGI Sequence Detail	1963	Not Applicable

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm11841:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36505	Chr4:12124397-12124404 (+)	-889 bp