Gm11839 Pseudogene Detail

Summary

• Symbol
  Gm11839
• Name
  predicted gene 11839

• Feature Type
  pseudogene
• IDs
  MGI:3651162
  NCBI Gene: 230010
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:12114284-12116236 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 5.58 cM

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651162	pseudogene	Chr4:12114084-12116438 (+)
129S1/SvImJ	ENSMUSG00200001412	pseudogene	Chr4:8753080-8755032 (+)
A/J	ENSMUSG00195002910	pseudogene	Chr4:9209810-9211762 (+)
AKR/J	ENSMUSG00220001379	pseudogene	Chr4:8947729-8949681 (+)
BALB/cJ	ENSMUSG00180004654	pseudogene	Chr4:8714954-8716906 (+)
C3H/HeJ	ENSMUSG00175017778	pseudogene	Chr4:9242972-9244924 (+)
C57BL/6NJ	ENSMUSG00215004621	pseudogene	Chr4:8859732-8861684 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026211	pseudogene	Chr4:8933350-8935298 (+)
CBA/J	ENSMUSG00210002602	pseudogene	Chr4:8980701-8982653 (+)
DBA/2J	ENSMUSG00185002593	pseudogene	Chr4:9090852-9092804 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000003376	pseudogene	Chr4:9195864-9197810 (+)
LP/J	ENSMUSG00230001333	pseudogene	Chr4:12264466-12266418 (+)
NOD/ShiLtJ	ENSMUSG00190013890	pseudogene	Chr4:8837310-8839262 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010005930	pseudogene	Chr4:8669501-8671447 (+)
SPRET/EiJ	ENSMSPG00010003251	pseudogene	Chr4:9053733-9055674 (+)
WSB/EiJ	ENSIUOG00005014076	pseudogene	Chr4:8763408-8765360 (+)

Homology

• Gene Tree
  Gm11839
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000083246 (Evidence)
• NCBI Gene
  230010

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083246	Ensembl Gene Model | MGI Sequence Detail	1953	C57BL/6J
transcript	ENSMUST00000120647	Ensembl | MGI Sequence Detail	1953	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm11839:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36503	Chr4:12113356-12113365 (+)	-923 bp
Tssr36504	Chr4:12113458-12113464 (+)	-823 bp