Gm11617 Pseudogene Detail

Summary

• Symbol
  Gm11617
• Name
  predicted gene 11617

• Feature Type
  pseudogene
• IDs
  MGI:3651153
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:101197568-101198206 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 64.64 cM

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651153	pseudogene	Chr11:101197568-101198206 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010841	pseudogene	Chr11:104151263-104151901 (+)
A/J	MGP_AJ_G0010839	pseudogene	Chr11:99773738-99774376 (+)
AKR/J	MGP_AKRJ_G0010799	pseudogene	Chr11:102873753-102874391 (+)
BALB/cJ	MGP_BALBcJ_G0010816	pseudogene	Chr11:100260636-100261274 (+)
C3H/HeJ	MGP_C3HHeJ_G0010719	pseudogene	Chr11:103049928-103050566 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011087	pseudogene	Chr11:107401800-107402438 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009701	pseudogene	Chr11:97187119-97187754 (+)
CAST/EiJ	MGP_CASTEiJ_G0010544	pseudogene	Chr11:104037539-104038176 (+)
CBA/J	MGP_CBAJ_G0010689	pseudogene	Chr11:111839899-111840537 (+)
DBA/2J	MGP_DBA2J_G0010736	pseudogene	Chr11:99303092-99303730 (+)
FVB/NJ	MGP_FVBNJ_G0010755	pseudogene	Chr11:98849573-98850211 (+)
LP/J	MGP_LPJ_G0010823	pseudogene	Chr11:104694922-104695560 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010729	pseudogene	Chr11:111400227-111400865 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011066	pseudogene	Chr11:103202098-103202736 (+)
PWK/PhJ	MGP_PWKPhJ_G0010433	pseudogene	Chr11:100357798-100358435 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010250	pseudogene	Chr11:102938705-102939342 (+)
WSB/EiJ	MGP_WSBEiJ_G0010595	pseudogene	Chr11:103198782-103199420 (+)

Homology

• Gene Tree
  Gm11617
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084152 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084152	Ensembl Gene Model | MGI Sequence Detail	639	C57BL/6J
transcript	ENSMUST00000119609	Ensembl | MGI Sequence Detail	639	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;