Hadhb-ps Pseudogene Detail

Summary

• Symbol
  Hadhb-ps
• Name
  hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta, pseudogene
• Synonyms
  Gm13910

• Feature Type
  pseudogene
• IDs
  MGI:3651143
  NCBI Gene: 623031
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:108779151-108780578 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 56.41 cM

Strain
Comparison

• SNPs within 2kb
  24 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651143	pseudogene	Chr2:108779115-108781073 (+)
129S1/SvImJ	ENSMUSG00200008598	pseudogene	Chr2:105641562-105642989 (+)
A/J	ENSMUSG00195031422	pseudogene	Chr2:105732883-105734310 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180033878	pseudogene	Chr2:105528100-105529527 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215030231	pseudogene	Chr2:105669367-105670794 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011553	pseudogene	Chr5:24732254-24750017 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210041880	pseudogene	Chr2:105805601-105807028 (+)
DBA/2J	ENSMUSG00185041245	pseudogene	Chr2:105524574-105526001 (+)
FVB/NJ	ENSMUSG00205020449	pseudogene	Chr2:104838608-104840035 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230006377	pseudogene	Chr2:107319635-107321062 (+)
NOD/ShiLtJ	ENSMUSG00190015867	pseudogene	Chr2:105744901-105746328 (+)
NZO/HlLtJ	ENSMUSG00225012860	pseudogene	Chr2:115219540-115220967 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010039333	pseudogene	Chr2:107483908-107484734 (+)
WSB/EiJ	ENSIUOG00005032798	pseudogene	Chr2:105377107-105378534 (+)

Homology

• Gene Tree
  Hadhb-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Hadhb-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000063684 (Evidence)
• NCBI Gene
  623031

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000063684	Ensembl Gene Model | MGI Sequence Detail	1428	C57BL/6J
transcript	ENSMUST00000121752	Ensembl | MGI Sequence Detail	1428	Not Applicable

Other
Accession IDs

MGI:6362704

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:151902 Favor J, et al., Analysis of Pax6 Contiguous Gene Deletions in the Mouse, Mus musculus, Identifies Regions Distinct from Pax6 Responsible for Extreme Small-Eye and Belly-Spotting Phenotypes. Genetics. 2009 Aug;182(4):1077-88

TSS for Hadhb-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19298	Chr2:108779113-108779125 (+)	-32 bp