Gm13830 Gene Detail

Summary

• Symbol
  Gm13830
• Name
  predicted gene 13830

• Feature Type
  lncRNA gene
• IDs
  MGI:3651141
  NCBI Gene: 102639268
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:115439158-115457267 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 56.04 cM

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651141	lncRNA gene	Chr5:115439158-115458141 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006768	lincRNA gene	Chr5:118150554-118169123 (+)
A/J	MGP_AJ_G0006762	lincRNA gene	Chr5:113466599-113484294 (+)
AKR/J	MGP_AKRJ_G0006732	lincRNA gene	Chr5:117107155-117124979 (+)
BALB/cJ	MGP_BALBcJ_G0006738	lincRNA gene	Chr5:114863383-114881168 (+)
C3H/HeJ	MGP_C3HHeJ_G0006683	lincRNA gene	Chr5:117607364-117625063 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006903	lincRNA gene	Chr5:122714756-122732531 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006158	lincRNA gene	Chr5:108243001-108262200 (+)
CAST/EiJ	MGP_CASTEiJ_G0006606	lincRNA gene	Chr5:116526165-116545768 (+)
CBA/J	MGP_CBAJ_G0006665	lincRNA gene	Chr5:127426995-127446808 (+)
DBA/2J	MGP_DBA2J_G0006685	lincRNA gene	Chr5:113539982-113558758 (+)
FVB/NJ	MGP_FVBNJ_G0006709	lincRNA gene	Chr5:112359291-112377575 (+)
LP/J	MGP_LPJ_G0006769	lincRNA gene	Chr5:118726421-118744239 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006693	lincRNA gene	Chr5:131744397-131763855 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006905	lincRNA gene	Chr5:116566257-116585415 (+)
PWK/PhJ	MGP_PWKPhJ_G0006545	lincRNA gene	Chr5:112200685-112219286 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006451	lincRNA gene	Chr5:114121032-114142414 (+)
WSB/EiJ	MGP_WSBEiJ_G0006657	lincRNA gene	Chr5:117164107-117181999 (+)

Homology

• Gene Tree
  Gm13830
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  13
• Chemically induced (other)
  1
• Gene trapped
  11
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13830
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000086368 (Evidence)
• NCBI Gene
  102639268

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086368	Ensembl Gene Model | MGI Sequence Detail	18110	C57BL/6J
transcript	ENSMUST00000149609	Ensembl | MGI Sequence Detail	1872	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm13830:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48213	Chr5:115451053-115451084 (+)	11,911 bp