Gm13830 Gene Detail

Summary

• Symbol
  Gm13830
• Name
  predicted gene 13830

• Feature Type
  lncRNA gene
• IDs
  MGI:3651141
  NCBI Gene: 102639268
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:115438793-115457267 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 56.04 cM

Strain
Comparison

• SNPs within 2kb
  473 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651141	lncRNA gene	Chr5:115438793-115458141 (+)
129S1/SvImJ	ENSMUSG00200024549	lncRNA gene	Chr5:109178871-109196746 (+)
A/J	ENSMUSG00195041279	lncRNA gene	Chr5:108693184-108711070 (+)
AKR/J	ENSMUSG00220051995	lncRNA gene	Chr5:108208258-108226134 (+)
BALB/cJ	ENSMUSG00180047536	lncRNA gene	Chr5:108829571-108847448 (+)
C3H/HeJ	ENSMUSG00175049736	lncRNA gene	Chr5:110816928-110834825 (+)
C57BL/6NJ	ENSMUSG00215039375	lncRNA gene	Chr5:108840077-108858186 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006158	lincRNA gene	Chr5:108243001-108262200 (+)
CAST/EiJ	ENSTCUG00005035552	lncRNA gene	Chr5:108012173-108036044 (+)
CBA/J	ENSMUSG00210045518	lncRNA gene	Chr5:109568326-109586225 (+)
DBA/2J	ENSMUSG00185055011	lncRNA gene	Chr5:112627639-112645518 (+)
FVB/NJ	ENSMUSG00205052573	lncRNA gene	Chr5:108467303-108485201 (+)
JF1/MsJ	ENSUMUG00000054335	lncRNA gene	Chr5:115446386-115464240 (+)
LP/J	ENSMUSG00230048779	lncRNA gene	Chr5:116717061-116734936 (+)
NOD/ShiLtJ	ENSMUSG00190048963	lncRNA gene	Chr5:108505942-108524040 (+)
NZO/HlLtJ	ENSMUSG00225017299	lncRNA gene	Chr5:124377072-124394947 (+)
PWK/PhJ	ENSLUMG00010040990	lncRNA gene	Chr5:107349246-107367005 (+)
SPRET/EiJ	ENSMSPG00010046962	lncRNA gene	Chr5:110630943-110649856 (+)
WSB/EiJ	ENSIUOG00005046771	lncRNA gene	Chr5:111209550-111227424 (+)

Homology

• Gene Tree
  Gm13830
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  13
• Chemically induced (other)
  1
• Gene trapped
  11
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13830
• Find Mice (IMSR)
  11 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  58
• RefSeq
  1

• Ensembl
  ENSMUSG00000086368 (Evidence)
• NCBI Gene
  102639268

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086368	Ensembl Gene Model | MGI Sequence Detail	18475	C57BL/6J
transcript	ENSMUST00000149609	Ensembl | MGI Sequence Detail	1877	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm13830:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48213	Chr5:115451053-115451084 (+)	12,276 bp