Gm12194 Pseudogene Detail

Summary

• Symbol
  Gm12194
• Name
  predicted gene 12194
• Synonyms
  EG380696

• Feature Type
  pseudogene
• IDs
  MGI:3651099
  NCBI Gene: 380696
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:50017734-50018745 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 30.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651099	pseudogene	Chr11:50017720-50018756 (-)
129S1/SvImJ	ENSMUSG00200040812	pseudogene	Chr11:46996157-46997168 (-)
A/J	ENSMUSG00195037851	pseudogene	Chr11:46946965-46947976 (-)
AKR/J	ENSMUSG00220040823	pseudogene	Chr11:47137039-47138050 (-)
BALB/cJ	ENSMUSG00180038654	pseudogene	Chr11:47008453-47009464 (-)
C3H/HeJ	ENSMUSG00175038736	pseudogene	Chr11:46978582-46979593 (-)
C57BL/6NJ	ENSMUSG00215036664	pseudogene	Chr11:46905412-46906423 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009580	pseudogene	Chr11:45018088-45019525 (-)
CAST/EiJ	ENSTCUG00005044262	pseudogene	Chr11:46532118-46533111 (-)
CBA/J	ENSMUSG00210029888	pseudogene	Chr11:46834538-46835549 (-)
DBA/2J	ENSMUSG00185028194	pseudogene	Chr11:47088732-47089743 (-)
FVB/NJ	ENSMUSG00205037094	pseudogene	Chr11:46876342-46877353 (-)
JF1/MsJ	ENSUMUG00000041503	pseudogene	Chr11:47350732-47351728 (-)
LP/J	ENSMUSG00230034068	pseudogene	Chr11:48227900-48228911 (-)
NOD/ShiLtJ	ENSMUSG00190044966	pseudogene	Chr11:47093157-47094168 (-)
NZO/HlLtJ	ENSMUSG00225036088	pseudogene	Chr11:50215509-50216520 (-)
PWK/PhJ	ENSLUMG00010034525	pseudogene	Chr11:46870142-46871138 (-)
SPRET/EiJ	ENSMSPG00010020752	pseudogene	Chr11:47519441-47520452 (-)
WSB/EiJ	ENSIUOG00005040438	pseudogene	Chr11:46895591-46896602 (-)

Homology

• Gene Tree
  Gm12194
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12194
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000084302 (Evidence)
• NCBI Gene
  380696

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084302	Ensembl Gene Model | MGI Sequence Detail	1012	C57BL/6J
transcript	ENSMUST00000117756	Ensembl | MGI Sequence Detail	1012	Not Applicable

Other
Accession IDs

MGI:3643574

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:97904 Makeyev AV, et al., HnRNP A3 genes and pseudogenes in the vertebrate genomes. J Exp Zoolog A Comp Exp Biol. 2005 Apr 1;303(4):259-71

TSS for Gm12194:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107709	Chr11:50018958-50018967 (-)	-218 bp