Ccdc50-ps Pseudogene Detail

Summary

• Symbol
  Ccdc50-ps
• Name
  Ccdc50 retrotransposed pseudogene
• Synonyms
  EG277707, Gm12699

• Feature Type
  pseudogene
• IDs
  MGI:3651098
  NCBI Gene: 277707
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:100424305-100425245 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651098	pseudogene	Chr4:100423767-100425351 (-)
129S1/SvImJ	ENSMUSG00200030404	pseudogene	Chr4:95431970-95432911 (-)
A/J	ENSMUSG00195008704	pseudogene	Chr4:95975894-95976833 (-)
AKR/J	ENSMUSG00220006912	pseudogene	Chr4:95414096-95415038 (-)
BALB/cJ	ENSMUSG00180034242	pseudogene	Chr4:94904905-94905845 (-)
C3H/HeJ	ENSMUSG00175015291	pseudogene	Chr4:95867020-95867960 (-)
C57BL/6NJ	ENSMUSG00215023681	pseudogene	Chr4:95798120-95799061 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007749	pseudogene	Chr4:95099577-95100511 (-)
CBA/J	ENSMUSG00210029377	pseudogene	Chr4:95439243-95440183 (-)
DBA/2J	ENSMUSG00185022373	pseudogene	Chr4:96194594-96195534 (-)
FVB/NJ	ENSMUSG00205016036	pseudogene	Chr4:94401917-94402858 (-)
JF1/MsJ	ENSUMUG00000042301	pseudogene	Chr4:96305298-96306224 (-)
LP/J	ENSMUSG00230023184	pseudogene	Chr4:99521491-99522432 (-)
NOD/ShiLtJ	ENSMUSG00190032806	pseudogene	Chr4:94878335-94879277 (-)
NZO/HlLtJ	ENSMUSG00225033298	pseudogene	Chr4:104646958-104647894 (-)
PWK/PhJ	ENSLUMG00010018870	pseudogene	Chr4:93996900-93997826 (-)
PWK/PhJ	ENSLUMG00010013977	pseudogene	Chr8:55631862-55632769 (+)
SPRET/EiJ	ENSMSPG00010008616	pseudogene	Chr4:96240491-96241423 (-)
WSB/EiJ	ENSIUOG00005003320	pseudogene	Chr4:95197211-95198143 (-)

Homology

• Gene Tree
  Ccdc50-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  3 involving Ccdc50-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000081553 (Evidence)
• NCBI Gene
  277707

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081553	Ensembl Gene Model | MGI Sequence Detail	941	C57BL/6J
transcript	ENSMUST00000118044	Ensembl | MGI Sequence Detail	941	Not Applicable

Other
Accession IDs

MGI:3645201

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Ccdc50-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42540	Chr4:100425201-100425234 (-)	27 bp