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Ccdc50-ps Pseudogene Detail
Summary
  • Symbol
    Ccdc50-ps
  • Name
    Ccdc50 retrotransposed pseudogene
  • Synonyms
    EG277707, Gm12699
  • Feature Type
    pseudogene
  • IDs
    MGI:3651098
    NCBI Gene: 277707
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:100424305-100425245 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 45.76 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    38 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3651098
 pseudogene Chr4:100423767-100425351 (-)
129S1/SvImJ MGP_129S1SvImJ_G0012787
 pseudogene Chr4:100839245-100840182 (-)
A/J MGP_AJ_G0012772
 pseudogene Chr4:97314320-97315253 (-)
AKR/J MGP_AKRJ_G0012743
 pseudogene Chr4:99652226-99653166 (-)
BALB/cJ MGP_BALBcJ_G0012753
 pseudogene Chr4:97549580-97550524 (-)
C3H/HeJ MGP_C3HHeJ_G0012610
 pseudogene Chr4:100486644-100487580 (-)
C57BL/6NJ MGP_C57BL6NJ_G0013085
 pseudogene Chr4:104669739-104670666 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0012365
 pseudogene Chr4:98269849-98270773 (-)
CBA/J MGP_CBAJ_G0012586
 pseudogene Chr4:107937556-107938483 (-)
DBA/2J MGP_DBA2J_G0012649
 pseudogene Chr4:97024519-97025459 (-)
FVB/NJ MGP_FVBNJ_G0012653
 pseudogene Chr4:95863727-95864648 (-)
LP/J MGP_LPJ_G0012724
 pseudogene Chr4:101138995-101139934 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0012662
 pseudogene Chr4:113526964-113527895 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0013092
 pseudogene Chr4:99926444-99927368 (-)
PWK/PhJ MGP_PWKPhJ_G0012188
 pseudogene Chr4:95192214-95193781 (-)
SPRET/EiJ MGP_SPRETEiJ_G0011997
 pseudogene Chr4:97382044-97385433 (-)
WSB/EiJ MGP_WSBEiJ_G0012391
 pseudogene Chr4:100090630-100091600 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Gene trapped
    1
  • Radiation induced
    1
  • Genomic Mutations
    3 involving Ccdc50-ps
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000081553 Ensembl Gene Model | MGI Sequence Detail 941 C57BL/6J ±  kb
transcript ENSMUST00000118044 Ensembl | MGI Sequence Detail 941 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:3645201
References
more
  • Summaries
    All 11
    Phenotypes 5
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory