Gm13316 Pseudogene Detail

Summary

• Symbol
  Gm13316
• Name
  predicted gene 13316

• Feature Type
  pseudogene
• IDs
  MGI:3651097
  NCBI Gene: 100418447
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:14816659-14817349 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 10.83 cM

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651097	pseudogene	Chr2:14816564-14817349 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014111	pseudogene	Chr8:127645649-127646339 (-)
A/J	MGP_AJ_G0014135	pseudogene	Chr8:122382131-122382821 (-)
AKR/J	MGP_AKRJ_G0011417	pseudogene	Chr18:62459108-62459823 (-)
BALB/cJ	MGP_BALBcJ_G0014085	pseudogene	Chr8:122565808-122566498 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0011799	pseudogene	Chr2:12643791-12644432 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012359	pseudogene	Chr8:115158219-115158909 (-)
CAST/EiJ	MGP_CASTEiJ_G0013572	pseudogene	Chr8:126651683-126652373 (-)
CBA/J	MGP_CBAJ_G0013900	pseudogene	Chr8:136754818-136755504 (-)
DBA/2J	MGP_DBA2J_G0013978	pseudogene	Chr8:121534394-121535080 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0014060	pseudogene	Chr8:127805772-127806569 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011786	pseudogene	Chr2:12151892-12154904 (-)
PWK/PhJ	MGP_PWKPhJ_G0013383	pseudogene	Chr8:121291199-121291889 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013168	pseudogene	Chr8:124774249-124774939 (-)
WSB/EiJ	MGP_WSBEiJ_G0013629	pseudogene	Chr8:126859834-126860524 (-)

Homology

• Gene Tree
  Gm13316
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000085281 (Evidence)
• NCBI Gene
  100418447

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085281	Ensembl Gene Model | MGI Sequence Detail	691	C57BL/6J
transcript	ENSMUST00000140537	Ensembl | MGI Sequence Detail	691	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;