Gm12459 Pseudogene Detail

Summary

• Symbol
  Gm12459
• Name
  predicted gene 12459

• Feature Type
  pseudogene
• IDs
  MGI:3651071
  NCBI Gene: 100504694
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:49746731-49747246 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 26.83 cM

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651071	pseudogene	Chr4:49746731-49747246 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012648	pseudogene	Chr4:48235886-48236401 (-)
A/J	MGP_AJ_G0012635	pseudogene	Chr4:46449701-46450216 (-)
AKR/J	MGP_AKRJ_G0012605	pseudogene	Chr4:47664714-47665229 (-)
BALB/cJ	MGP_BALBcJ_G0012618	pseudogene	Chr4:46557524-46558039 (-)
C3H/HeJ	MGP_C3HHeJ_G0012480	pseudogene	Chr4:48235590-48236105 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012940	pseudogene	Chr4:49963771-49964286 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011253	pseudogene	Chr4:43651879-43652372 (-)
CAST/EiJ	MGP_CASTEiJ_G0012237	pseudogene	Chr4:47801591-47802108 (-)
CBA/J	MGP_CBAJ_G0012460	pseudogene	Chr4:51671359-51671874 (-)
DBA/2J	MGP_DBA2J_G0012517	pseudogene	Chr4:46332722-46333237 (-)
FVB/NJ	MGP_FVBNJ_G0012518	pseudogene	Chr4:45594884-45595399 (-)
LP/J	MGP_LPJ_G0012588	pseudogene	Chr4:48305981-48306496 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012525	pseudogene	Chr4:54583792-54584306 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012942	pseudogene	Chr4:47869517-47870032 (-)
PWK/PhJ	MGP_PWKPhJ_G0012063	pseudogene	Chr4:46406734-46407248 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011877	pseudogene	Chr4:47250226-47256986 (-)
WSB/EiJ	MGP_WSBEiJ_G0012258	pseudogene	Chr4:47777257-47777771 (-)

Homology

• Gene Tree
  Gm12459
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083153 (Evidence)
• NCBI Gene
  100504694

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083153	Ensembl Gene Model | MGI Sequence Detail	516	C57BL/6J
transcript	ENSMUST00000120659	Ensembl | MGI Sequence Detail	356	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12459:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41702	Chr4:49747259-49747271 (-)	-19 bp