Gm11240 Gene Detail

Summary

• Symbol
  Gm11240
• Name
  predicted gene 11240

• Feature Type
  lncRNA gene
• IDs
  MGI:3651058
  NCBI Gene: 667768
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:73709481-73716615 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 36.06 cM

Strain
Comparison

• SNPs within 2kb
  253 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651058	lncRNA gene	Chr4:73709121-73783457 (+)
129S1/SvImJ	ENSMUSG00200000592	lncRNA gene	Chr4:68653883-68661005 (+)
A/J	ENSMUSG00195000914	lncRNA gene	Chr4:69190791-69197921 (+)
AKR/J	ENSMUSG00220018810	lncRNA gene	Chr4:68917016-68924140 (+)
BALB/cJ	ENSMUSG00180000835	lncRNA gene	Chr4:68156824-68163938 (+)
C3H/HeJ	ENSMUSG00175006654	lncRNA gene	Chr4:69092910-69100040 (+)
C57BL/6NJ	ENSMUSG00215000982	lncRNA gene	Chr4:69084879-69092003 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013679	unclassified non-coding RNA gene	Chr4:67046421-67053450 (+)
CAST/EiJ	ENSTCUG00005014769	lncRNA gene	Chr4:68718669-68730546 (+)
CBA/J	ENSMUSG00210000689	lncRNA gene	Chr4:68695272-68702394 (+)
DBA/2J	ENSMUSG00185015730	lncRNA gene	Chr4:69250822-69257948 (+)
FVB/NJ	ENSMUSG00205001113	lncRNA gene	Chr4:67432724-67439853 (+)
JF1/MsJ	ENSUMUG00000000706	lncRNA gene	Chr4:69859382-69866518 (+)
LP/J	ENSMUSG00230008826	lncRNA gene	Chr4:72746493-72753617 (+)
NOD/ShiLtJ	ENSMUSG00190009169	lncRNA gene	Chr4:68103393-68110522 (+)
NZO/HlLtJ	ENSMUSG00225028015	lncRNA gene	Chr4:77763616-77770729 (+)
PWK/PhJ	ENSLUMG00010010179	lncRNA gene	Chr4:67599052-67606234 (+)
SPRET/EiJ	ENSMSPG00010005003	lncRNA gene	Chr4:68951302-68954115 (+)
WSB/EiJ	ENSIUOG00005000375	lncRNA gene	Chr4:68494468-68501591 (+)

Homology

• Gene Tree
  Gm11240
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm11240
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  57
• RefSeq
  2

• Ensembl
  ENSMUSG00000085034 (Evidence)
• NCBI Gene
  667768

Representative Sequences			Length	Strain/Species
genomic	667768	NCBI Gene Model | MGI Sequence Detail	7135	C57BL/6J
transcript	NR_046041	RefSeq | MGI Sequence Detail	759	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm11240:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37631	Chr4:73709138-73709141 (+)	-341 bp
Tssr37632	Chr4:73709153-73709177 (+)	-316 bp