Gm12843 Gene Detail

Summary

• Symbol
  Gm12843
• Name
  predicted gene 12843

• Feature Type
  lncRNA gene
• IDs
  MGI:3651051
  NCBI Gene: 102637763
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:117146017-117154922 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.44 cM

Strain
Comparison

• SNPs within 2kb
  312 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651051	lncRNA gene	Chr4:117146017-117162586 (+)
129S1/SvImJ	ENSMUSG00200050096	lncRNA gene	Chr4:111049583-111051491 (+)
A/J	ENSMUSG00195033378	lncRNA gene	Chr4:112308751-112310659 (+)
AKR/J	ENSMUSG00220012418	lncRNA gene	Chr4:111656569-111658477 (+)
BALB/cJ	ENSMUSG00180047279	lncRNA gene	Chr4:110377371-110379279 (+)
C3H/HeJ	ENSMUSG00175042117	lncRNA gene	Chr4:111391722-111393630 (+)
C57BL/6NJ	ENSMUSG00215039244	lncRNA gene	Chr4:112477515-112479423 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003544	antisense lncRNA gene	Chr4:107743823-107745722 (+)
CAST/EiJ	ENSTCUG00005023042	lncRNA gene	Chr4:111175558-111177448 (+)
CBA/J	ENSMUSG00210053437	lncRNA gene	Chr4:111005417-111007325 (+)
DBA/2J	ENSMUSG00185049277	lncRNA gene	Chr4:112534350-112536258 (+)
FVB/NJ	ENSMUSG00205044573	lncRNA gene	Chr4:110474798-110476706 (+)
JF1/MsJ	ENSUMUG00000023356	lncRNA gene	Chr4:112441487-112443376 (+)
LP/J	ENSMUSG00230047400	lncRNA gene	Chr4:115866792-115868700 (+)
NOD/ShiLtJ	ENSMUSG00190048318	lncRNA gene	Chr4:110378752-110380660 (+)
NZO/HlLtJ	ENSMUSG00225011260	lncRNA gene	Chr4:121348472-121350380 (+)
PWK/PhJ	ENSLUMG00010048611	lncRNA gene	Chr4:109840686-109842574 (+)
SPRET/EiJ	ENSMSPG00010030464	lncRNA gene	Chr4:111938246-111940142 (+)
WSB/EiJ	ENSIUOG00005045080	lncRNA gene	Chr4:110696349-110698257 (+)

Homology

• Gene Tree
  Gm12843
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  2
• Gene trapped
  4
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12843
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  10

• Ensembl
  ENSMUSG00000085749 (Evidence)
• NCBI Gene
  102637763

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085749	Ensembl Gene Model | MGI Sequence Detail	8906	C57BL/6J
transcript	ENSMUST00000137607	Ensembl | MGI Sequence Detail	732	Not Applicable

References

• Summaries
  All 14

  Phenotypes 8
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12