Gm13938 Gene Detail

Summary

• Symbol
  Gm13938
• Name
  predicted gene 13938

• Feature Type
  lncRNA gene
• IDs
  MGI:3651046
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:76553120-76617052 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 45.14 cM

Strain
Comparison

• SNPs within 2kb
  975 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651046	lncRNA gene	Chr2:76553120-76617052 (+)
129S1/SvImJ	ENSMUSG00200004520	lncRNA gene	Chr2:73597563-73661495 (+)
A/J	ENSMUSG00195021572	lncRNA gene	Chr2:73746268-73810202 (+)
AKR/J	ENSMUSG00220002616	lncRNA gene	Chr2:73715031-73778960 (+)
BALB/cJ	ENSMUSG00180007472	lncRNA gene	Chr2:73699881-73763811 (+)
C3H/HeJ	ENSMUSG00175012021	lncRNA gene	Chr2:73823067-73887003 (+)
C57BL/6NJ	ENSMUSG00215031468	lncRNA gene	Chr2:73665979-73729913 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003214	antisense lncRNA gene	Chr2:71533809-71597966 (+)
CAST/EiJ	ENSTCUG00005031717	lncRNA gene	Chr2:73140389-73204278 (+)
CBA/J	ENSMUSG00210002643	lncRNA gene	Chr2:73862416-73926346 (+)
DBA/2J	ENSMUSG00185011929	lncRNA gene	Chr2:73698213-73762153 (+)
FVB/NJ	ENSMUSG00205021205	lncRNA gene	Chr2:73160331-73224268 (+)
JF1/MsJ	ENSUMUG00000045762	lncRNA gene	Chr2:73396710-73460804 (+)
LP/J	ENSMUSG00230027371	lncRNA gene	Chr2:75504294-75568224 (+)
NOD/ShiLtJ	ENSMUSG00190011065	lncRNA gene	Chr2:73779129-73843103 (+)
NZO/HlLtJ	ENSMUSG00225003912	lncRNA gene	Chr2:83275237-83339164 (+)
PWK/PhJ	ENSLUMG00010033385	lncRNA gene	Chr2:73618697-73682719 (+)
SPRET/EiJ	ENSMSPG00010022144	lncRNA gene	Chr2:75014752-75078563 (+)
WSB/EiJ	ENSIUOG00005011620	lncRNA gene	Chr2:73841270-73905220 (+)

Homology

• Gene Tree
  Gm13938
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13938
• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000086354 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086354	Ensembl Gene Model | MGI Sequence Detail	63933	C57BL/6J
transcript	ENSMUST00000156809	Ensembl | MGI Sequence Detail	493	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087