Gm13430 Pseudogene Detail

Summary

• Symbol
  Gm13430
• Name
  predicted gene 13430

• Feature Type
  pseudogene
• IDs
  MGI:3651032
  NCBI Gene: 101056240
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:36279144-36279431 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 24.19 cM

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651032	pseudogene	Chr2:36279023-36280045 (+)
129S1/SvImJ	ENSMUSG00200048469	pseudogene	Chr2:33272420-33272707 (+)
A/J	ENSMUSG00195040112	pseudogene	Chr2:33374479-33374766 (+)
AKR/J	ENSMUSG00220045058	pseudogene	Chr2:33488001-33488288 (+)
BALB/cJ	ENSMUSG00180049735	pseudogene	Chr2:33381092-33381379 (+)
C3H/HeJ	ENSMUSG00175046769	pseudogene	Chr2:33360485-33360772 (+)
C57BL/6NJ	ENSMUSG00215046610	pseudogene	Chr2:33414551-33414838 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017917	pseudogene	Chr2:33079974-33080259 (+)
CBA/J	ENSMUSG00210049858	pseudogene	Chr2:33427445-33427732 (+)
DBA/2J	ENSMUSG00185047885	pseudogene	Chr2:33287267-33287554 (+)
FVB/NJ	ENSMUSG00205038702	pseudogene	Chr2:33139050-33139337 (+)
JF1/MsJ	ENSUMUG00000014754	pseudogene	Chr2:33142871-33143158 (+)
LP/J	ENSMUSG00230047038	pseudogene	Chr2:35207640-35207927 (+)
NOD/ShiLtJ	ENSMUSG00190041566	pseudogene	Chr2:33394017-33394304 (+)
NZO/HlLtJ	ENSMUSG00225050061	pseudogene	Chr2:42971107-42971394 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010042602	pseudogene	Chr2:33957551-33957838 (+)
SPRET/EiJ	ENSMSPG00010010252	pseudogene	Chr4:49053457-49053737 (-)
WSB/EiJ	ENSIUOG00005041063	pseudogene	Chr2:33273554-33273841 (+)

Homology

• Gene Tree
  Gm13430
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083101 (Evidence)
• NCBI Gene
  101056240

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083101	Ensembl Gene Model | MGI Sequence Detail	288	C57BL/6J
transcript	ENSMUST00000121366	Ensembl | MGI Sequence Detail	288	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13430:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17519	Chr2:36279014-36279060 (+)	-107 bp