Gm11433 Pseudogene Detail

Summary

• Symbol
  Gm11433
• Name
  predicted gene 11433

• Feature Type
  pseudogene
• IDs
  MGI:3651026
  NCBI Gene: 102635563
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:83568344-83569171 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 51.14 cM

Strain
Comparison

• SNPs within 2kb
  14 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651026	pseudogene	Chr11:83568344-83569171 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0039968	pseudogene	Chr11:82206898-82207725 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040548	pseudogene	Chr11:87629579-87630406 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037099	pseudogene	Chr11:78908484-78909315 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0039745	pseudogene	Chr11:80875126-80875953 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039728	pseudogene	Chr11:91562228-91563055 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040643	pseudogene	Chr11:84508041-84508868 (+)
PWK/PhJ	MGP_PWKPhJ_G0038401	pseudogene	Chr11:82150675-82151502 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038129	pseudogene	Chr11:84042604-84043429 (+)
WSB/EiJ	MGP_WSBEiJ_G0038944	pseudogene	Chr11:84360760-84361587 (+)

Homology

• Gene Tree
  Gm11433
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Transgenic
  3
• Genomic Mutations
  1 involving Gm11433
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12

• Ensembl
  ENSMUSG00000083664 (Evidence)
• NCBI Gene
  102635563

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083664	Ensembl Gene Model | MGI Sequence Detail	828	C57BL/6J
transcript	ENSMUST00000118318	Ensembl | MGI Sequence Detail	228	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:287321 Seo W, et al., Runx-mediated regulation of CCL5 via antagonizing two enhancers influences immune cell function and anti-tumor immunity. Nat Commun. 2020 Mar 26;11(1):1562

TSS for Gm11433:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103745	Chr11:83568333-83568337 (+)	-9 bp