Gm12489 Pseudogene Detail

Summary

• Symbol
  Gm12489
• Name
  predicted gene 12489

• Feature Type
  pseudogene
• IDs
  MGI:3650952
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:107826978-107827125 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.83 cM

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650952	pseudogene	Chr3:107826978-107827125 (+)
129S1/SvImJ	ENSMUSG00200036099	pseudogene	Chr3:104442747-104442894 (+)
A/J	ENSMUSG00195025846	pseudogene	Chr3:104869168-104869315 (+)
AKR/J	ENSMUSG00220034007	pseudogene	Chr3:103232796-103232943 (+)
BALB/cJ	ENSMUSG00180020199	pseudogene	Chr3:104820459-104820606 (+)
C3H/HeJ	ENSMUSG00175031074	pseudogene	Chr3:104349296-104349443 (+)
C57BL/6NJ	ENSMUSG00215033318	pseudogene	Chr3:105077165-105077312 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011006	pseudogene	Chr3:102119774-102119921 (+)
CAST/EiJ	ENSTCUG00005027850	pseudogene	Chr3:105354447-105354594 (+)
CBA/J	ENSMUSG00210009138	pseudogene	Chr3:104971161-104971308 (+)
DBA/2J	ENSMUSG00185022774	pseudogene	Chr3:105440491-105440638 (+)
FVB/NJ	ENSMUSG00205032820	pseudogene	Chr3:104004292-104004439 (+)
JF1/MsJ	ENSUMUG00000005168	pseudogene	Chr3:104408851-104408998 (+)
LP/J	ENSMUSG00230020237	pseudogene	Chr3:107355754-107355901 (+)
NOD/ShiLtJ	ENSMUSG00190040610	pseudogene	Chr3:105678572-105678719 (+)
NZO/HlLtJ	ENSMUSG00225021174	pseudogene	Chr3:109854408-109854555 (+)
PWK/PhJ	ENSLUMG00010024760	pseudogene	Chr3:104264956-104265103 (+)
SPRET/EiJ	ENSMSPG00010037475	pseudogene	Chr3:104786698-104786845 (+)
WSB/EiJ	ENSIUOG00005004728	pseudogene	Chr3:104993019-104993166 (+)

Homology

• Gene Tree
  Gm12489
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm12489
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082720 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082720	Ensembl Gene Model | MGI Sequence Detail	148	C57BL/6J
transcript	ENSMUST00000119364	Ensembl | MGI Sequence Detail	148	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:286217 Xiang Z, et al., Mice lacking three Loci encoding 14 glutathione transferase genes: a novel tool for assigning function to the GSTP, GSTM, and GSTT families. Drug Metab Dispos. 2014 Jun;42(6):1074-83
• Latest
  J:281737 Behrens KA, et al., Beyond detoxification: Pleiotropic functions of multiple glutathione S-transferase isoforms protect mice against a toxic electrophile. PLoS One. 2019;14(11):e0225449