Rps15a-ps3 Pseudogene Detail

Summary

• Symbol
  Rps15a-ps3
• Name
  ribosomal protein S15A, pseudogene 3
• Synonyms
  Gm13048

• Feature Type
  pseudogene
• IDs
  MGI:3650886
  NCBI Gene: 108168715
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:150931570-150931964 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 81.50 cM

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650886	pseudogene	Chr4:150931547-150931972 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012942	pseudogene	Chr4:154867898-154872230 (+)
A/J	MGP_AJ_G0012929	pseudogene	Chr4:148350636-148351659 (+)
AKR/J	MGP_AKRJ_G0012896	pseudogene	Chr4:152413743-152416005 (+)
BALB/cJ	MGP_BALBcJ_G0012908	pseudogene	Chr4:148841675-148842378 (+)
C3H/HeJ	MGP_C3HHeJ_G0012761	pseudogene	Chr4:152983576-152983970 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013265	pseudogene	Chr4:160429493-160429837 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012730	pseudogene	Chr4:165180348-165183244 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0012809	pseudogene	Chr4:147579257-147580634 (+)
LP/J	MGP_LPJ_G0012874	pseudogene	Chr4:154792636-154793030 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012824	pseudogene	Chr4:168302671-168304886 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012193	pseudogene	Chr2:154741021-154742355 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012533	pseudogene	Chr4:153079599-153080710 (+)

Homology

• Gene Tree
  Rps15a-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Rps15a-ps3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000084314 (Evidence)
• NCBI Gene
  108168715

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084314	Ensembl Gene Model | MGI Sequence Detail	395	C57BL/6J
transcript	ENSMUST00000121072	Ensembl | MGI Sequence Detail	395	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:121726 Bagchi A, et al., CHD5 is a tumor suppressor at human 1p36. Cell. 2007 Feb 9;128(3):459-75
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16

TSS for Rps15a-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40442	Chr4:150931538-150931561 (+)	-20 bp