Rps15a-ps3 Pseudogene Detail

Summary

• Symbol
  Rps15a-ps3
• Name
  ribosomal protein S15A, pseudogene 3
• Synonyms
  Gm13048

• Feature Type
  pseudogene
• IDs
  MGI:3650886
  NCBI Gene: 108168715
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:150931570-150931964 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 81.50 cM

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650886	pseudogene	Chr4:150931547-150931972 (+)
129S1/SvImJ	ENSMUSG00200047671	pseudogene	Chr4:141998302-141998696 (+)
A/J	ENSMUSG00195020762	pseudogene	Chr4:143630754-143631148 (+)
AKR/J	ENSMUSG00220028393	pseudogene	Chr4:143216588-143216982 (+)
BALB/cJ	ENSMUSG00180048452	pseudogene	Chr4:141313294-141313688 (+)
C3H/HeJ	ENSMUSG00175019722	pseudogene	Chr4:144596875-144597269 (+)
C57BL/6NJ	ENSMUSG00215029197	pseudogene	Chr4:143441753-143442147 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036812	pseudogene	Chr4:147306203-147306597 (+)
CBA/J	ENSMUSG00210006481	pseudogene	Chr4:143248491-143248885 (+)
DBA/2J	ENSMUSG00185017344	pseudogene	Chr4:146814457-146814851 (+)
FVB/NJ	ENSMUSG00205046040	pseudogene	Chr4:141710881-141711275 (+)
JF1/MsJ	ENSUMUG00000008437	pseudogene	Chr4:149819259-149819653 (+)
LP/J	ENSMUSG00230025680	pseudogene	Chr4:153546491-153546885 (+)
NOD/ShiLtJ	ENSMUSG00190004261	pseudogene	Chr4:142914245-142914639 (+)
NZO/HlLtJ	ENSMUSG00225024467	pseudogene	Chr4:157541837-157542231 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005048064	pseudogene	Chr4:141085943-141086337 (+)
WSB/EiJ	ENSIUOG00005041869	pseudogene	Chr1:165479071-165479465 (+)

Homology

• Gene Tree
  Rps15a-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Rps15a-ps3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084314 (Evidence)
• NCBI Gene
  108168715

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084314	Ensembl Gene Model | MGI Sequence Detail	395	C57BL/6J
transcript	ENSMUST00000121072	Ensembl | MGI Sequence Detail	395	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:121726 Bagchi A, et al., CHD5 is a tumor suppressor at human 1p36. Cell. 2007 Feb 9;128(3):459-75
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16

TSS for Rps15a-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40442	Chr4:150931538-150931561 (+)	-20 bp