Gm12988 Pseudogene Detail

Summary

• Symbol
  Gm12988
• Name
  predicted gene 12988

• Feature Type
  pseudogene
• IDs
  MGI:3650876
  NCBI Gene: 665334
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:135483529-135484006 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 68.00 cM

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650876	pseudogene	Chr4:135482886-135484088 (-)
129S1/SvImJ	ENSMUSG00200021189	pseudogene	Chr4:128903231-128903708 (-)
A/J	ENSMUSG00195045482	pseudogene	Chr4:130255127-130255604 (-)
AKR/J	ENSMUSG00220047805	pseudogene	Chr4:129249747-129250224 (-)
BALB/cJ	ENSMUSG00180050477	pseudogene	Chr4:127887488-127887965 (-)
C3H/HeJ	ENSMUSG00175048640	pseudogene	Chr4:128908998-128909475 (-)
C57BL/6NJ	ENSMUSG00215052550	pseudogene	Chr4:130422858-130423335 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011456	pseudogene	Chr4:125424595-125425083 (-)
CAST/EiJ	ENSTCUG00005049090	pseudogene	Chr4:129824120-129824597 (-)
CBA/J	ENSMUSG00210053998	pseudogene	Chr4:128532928-128533405 (-)
DBA/2J	ENSMUSG00185053736	pseudogene	Chr4:130060834-130061311 (-)
FVB/NJ	ENSMUSG00205049101	pseudogene	Chr4:128304362-128304839 (-)
JF1/MsJ	ENSUMUG00000046478	pseudogene	Chr4:130757849-130758326 (-)
LP/J	ENSMUSG00230041749	pseudogene	Chr4:133841519-133841996 (-)
NOD/ShiLtJ	ENSMUSG00190049102	pseudogene	Chr4:128293102-128293579 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010050080	pseudogene	Chr4:127739808-127740285 (-)
SPRET/EiJ	ENSMSPG00010045147	pseudogene	Chr4:129807754-129808243 (-)
WSB/EiJ	ENSIUOG00005044857	pseudogene	Chr4:128195433-128195910 (-)

Homology

• Gene Tree
  Gm12988
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm12988
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082743 (Evidence)
• NCBI Gene
  665334

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082743	Ensembl Gene Model | MGI Sequence Detail	478	C57BL/6J
transcript	ENSMUST00000119054	Ensembl | MGI Sequence Detail	478	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12988:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1339	Chr4:135484087-135484091 (-)	-83 bp