Gm13286 Pseudogene Detail

Summary

• Symbol
  Gm13286
• Name
  predicted gene 13286

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3650855
  NCBI Gene: 100041062
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:88676081-88676617 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 42.03 cM

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650855	pseudogene	Chr4:88676081-88676629 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215021939	pseudogene	Chr4:84050645-84051181 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019224	pseudogene	Chr4:83632249-83632785 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205013709	pseudogene	Chr4:82565373-82565909 (+)
JF1/MsJ	ENSUMUG00000002925	pseudogene	Chr4:84606855-84607391 (+)
LP/J	ENSMUSG00230018267	pseudogene	Chr4:87748599-87749135 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225003631	pseudogene	Chr4:92862916-92863452 (+)
PWK/PhJ	ENSLUMG00010003512	pseudogene	Chr4:82432662-82433198 (+)
SPRET/EiJ	ENSMSPG00010015957	pseudogene	Chr4:84173888-84174424 (+)
WSB/EiJ	ENSIUOG00005013196	pseudogene	Chr4:83521188-83521724 (+)

Homology

• Gene Tree
  Gm13286
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  2
• Radiation induced
  1
• Genomic Mutations
  5 involving Gm13286
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  2

• Ensembl
  ENSMUSG00000081501 (Evidence)
• NCBI Gene
  100041062

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081501	Ensembl Gene Model | MGI Sequence Detail	537	C57BL/6J
transcript	ENSMUST00000117750	Ensembl | MGI Sequence Detail	537	Not Applicable
polypeptide	NP_001230079	RefSeq | MGI Sequence Detail	178	C57BL/6

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48