Mup-ps23 Pseudogene Detail

Summary

• Symbol
  Mup-ps23
• Name
  major urinary protein, pseudogene 23
• Synonyms
  Gm12574

• Feature Type
  pseudogene
• IDs
  MGI:3650815
  NCBI Gene: 435785
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:61773641-61774791 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 32.90 cM

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650815	pseudogene	Chr4:61773473-61774868 (-)
129S1/SvImJ	ENSMUSG00200004763	pseudogene	Chr4:56759455-56760717 (-)
A/J	ENSMUSG00195008606	pseudogene	Chr4:57349626-57350888 (-)
AKR/J	ENSMUSG00220006595	pseudogene	Chr4:57153994-57155256 (-)
BALB/cJ	ENSMUSG00180032354	pseudogene	Chr4:56302646-56303908 (-)
C3H/HeJ	ENSMUSG00175023236	pseudogene	Chr4:57099967-57101230 (-)
C57BL/6NJ	ENSMUSG00215032792	pseudogene	Chr4:57168645-57169795 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011285	pseudogene	Chr4:55848443-55849764 (-)
CAST/EiJ	ENSTCUG00005008531	pseudogene	Chr4:56929626-56930888 (-)
CBA/J	ENSMUSG00210006671	pseudogene	Chr4:56836093-56837355 (-)
DBA/2J	ENSMUSG00185019696	pseudogene	Chr4:57223874-57225136 (-)
FVB/NJ	ENSMUSG00205020360	pseudogene	Chr4:55653058-55654320 (-)
JF1/MsJ	ENSUMUG00000033262	pseudogene	Chr4:57890819-57892081 (-)
LP/J	ENSMUSG00230005164	pseudogene	Chr4:60740522-60741784 (-)
LP/J	ENSMUSG00230019373	pseudogene	Chr4:145641627-145642889 (-)
NOD/ShiLtJ	ENSMUSG00190042664	pseudogene	Chr4:56253504-56254766 (-)
NZO/HlLtJ	ENSMUSG00225013799	pseudogene	Chr4:65768760-65770022 (-)
NZO/HlLtJ	ENSMUSG00225013850	pseudogene	Chr4:64950316-64951578 (-)
PWK/PhJ	ENSLUMG00010007890	pseudogene	Chr4:55518829-55520091 (-)
SPRET/EiJ	ENSMSPG00010036540	pseudogene	Chr4:56829422-56830677 (-)
WSB/EiJ	ENSIUOG00005022927	pseudogene	Chr4:56685600-56686749 (-)

Homology

• Gene Tree
  Mup-ps23
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Mup-ps23
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000081755 (Evidence)
• NCBI Gene
  435785

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081755	Ensembl Gene Model | MGI Sequence Detail	1151	C57BL/6J
transcript	ENSMUST00000118063	Ensembl | MGI Sequence Detail	630	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:334686 Yang H, et al., Mup-knockout mice generated through CRISPR/Cas9-mediated deletion for use in urinary protein analysis. Acta Biochim Biophys Sin (Shanghai). 2016 May;48(5):468-73
• Latest
  J:334590 Greve S, et al., The major urinary protein gene cluster knockout mouse as a novel model for translational metabolism research. Sci Rep. 2022 Aug 1;12(1):13161

TSS for Mup-ps23:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41964	Chr4:61774025-61774030 (-)	763 bp