Gm11379 Gene Detail

Summary

• Symbol
  Gm11379
• Name
  predicted gene 11379

• Feature Type
  lncRNA gene
• IDs
  MGI:3650783
  NCBI Gene: 118568039
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr13:31969055-31983714 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 13.52 cM

Strain
Comparison

• SNPs within 2kb
  511 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650783	lncRNA gene	Chr13:31969055-32052265 (+)
129S1/SvImJ	ENSMUSG00200032709	lncRNA gene	Chr13:29175950-29179202 (+)
A/J	ENSMUSG00195038888	lncRNA gene	Chr13:28280697-28283949 (+)
AKR/J	ENSMUSG00220013057	lncRNA gene	Chr13:28140041-28143293 (+)
BALB/cJ	ENSMUSG00180026288	lncRNA gene	Chr13:28580868-28584118 (+)
C3H/HeJ	ENSMUSG00175036446	lncRNA gene	Chr13:28603192-28606442 (+)
C57BL/6NJ	ENSMUSG00215014215	lncRNA gene	Chr13:28774117-28777367 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002814	antisense lncRNA gene	Chr13:27303765-27306836 (+)
CAST/EiJ	ENSTCUG00005011396	lncRNA gene	Chr13:28737124-28740424 (+)
CBA/J	ENSMUSG00210027765	lncRNA gene	Chr13:28546817-28550067 (+)
DBA/2J	ENSMUSG00185020896	lncRNA gene	Chr13:29365874-29369124 (+)
FVB/NJ	ENSMUSG00205035251	lncRNA gene	Chr13:28392480-28395730 (+)
JF1/MsJ	ENSUMUG00000025814	lncRNA gene	Chr13:29018428-29021699 (+)
LP/J	ENSMUSG00230020765	lncRNA gene	Chr13:38690475-38693725 (+)
NOD/ShiLtJ	ENSMUSG00190039483	lncRNA gene	Chr13:28756605-28759855 (+)
NZO/HlLtJ	ENSMUSG00225035364	lncRNA gene	Chr13:32490754-32494004 (+)
PWK/PhJ	ENSLUMG00010033507	lncRNA gene	Chr13:27799960-27803263 (+)
SPRET/EiJ	ENSMSPG00010027514	lncRNA gene	Chr13:27878564-27881855 (+)
WSB/EiJ	ENSIUOG00005017076	lncRNA gene	Chr13:27954942-27958212 (+)

Homology

• Gene Tree
  Gm11379
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm11379
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000086144 (Evidence)
• NCBI Gene
  118568039

Representative Sequences			Length	Strain/Species
genomic	118568039	NCBI Gene Model | MGI Sequence Detail	14660	C57BL/6J
transcript	XR_004938098	RefSeq | MGI Sequence Detail	1290	C57BL/6J

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for Gm11379:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119133	Chr13:31969095-31969103 (+)	44 bp
Tssr119134	Chr13:31969116-31969128 (+)	67 bp
Tssr119135	Chr13:31969206-31969215 (+)	156 bp
Tssr119136	Chr13:31969226-31969236 (+)	176 bp
Tssr119137	Chr13:31969241-31969253 (+)	192 bp