Gm11380 Pseudogene Detail

Summary

• Symbol
  Gm11380
• Name
  predicted gene 11380

• Feature Type
  pseudogene
• IDs
  MGI:3650782
  NCBI Gene: 108168073
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:32068208-32069207 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 13.54 cM

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650782	pseudogene	Chr13:32068033-32069216 (+)
129S1/SvImJ	ENSMUSG00200030732	pseudogene	Chr13:29262648-29263647 (+)
A/J	ENSMUSG00195039253	pseudogene	Chr13:28367406-28367964 (+)
AKR/J	ENSMUSG00220013117	pseudogene	Chr13:28226770-28227328 (+)
BALB/cJ	ENSMUSG00180023218	pseudogene	Chr13:28667547-28668105 (+)
C3H/HeJ	ENSMUSG00175033281	pseudogene	Chr13:28689889-28690447 (+)
C57BL/6NJ	ENSMUSG00215018763	pseudogene	Chr13:28860812-28861811 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009858	pseudogene	Chr13:27390644-27391196 (+)
CAST/EiJ	ENSTCUG00005011336	pseudogene	Chr13:28824431-28824979 (+)
CBA/J	ENSMUSG00210028039	pseudogene	Chr13:28633492-28634050 (+)
DBA/2J	ENSMUSG00185021003	pseudogene	Chr13:29452572-29453130 (+)
FVB/NJ	ENSMUSG00205030368	pseudogene	Chr13:28479181-28480180 (+)
JF1/MsJ	ENSUMUG00000023036	pseudogene	Chr13:29105664-29106222 (+)
LP/J	ENSMUSG00230020780	pseudogene	Chr13:38777130-38777688 (+)
NOD/ShiLtJ	ENSMUSG00190035916	pseudogene	Chr13:28843294-28844293 (+)
NZO/HlLtJ	ENSMUSG00225035377	pseudogene	Chr13:32577461-32578460 (+)
PWK/PhJ	ENSLUMG00010033387	pseudogene	Chr13:27886915-27887473 (+)
SPRET/EiJ	ENSMSPG00010025936	pseudogene	Chr13:27962738-27963296 (+)
WSB/EiJ	ENSIUOG00005017125	pseudogene	Chr13:28040994-28041552 (+)

Homology

• Gene Tree
  Gm11380
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm11380
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000083149 (Evidence)
• NCBI Gene
  108168073

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083149	Ensembl Gene Model | MGI Sequence Detail	1000	C57BL/6J
transcript	ENSMUST00000118067	Ensembl | MGI Sequence Detail	560	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm11380:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119148	Chr13:32068170-32068183 (+)	-31 bp