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Lncucc1 Gene Detail
Summary
  • Symbol
    Lncucc1
  • Name
    ulcerative colitis circadian clock long noncoding RNA 1
  • Synonyms
    Gm12122, Lnc-UC
Location &
Maps
more
  • Sequence Map
    Chr11:35240896-35241612 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 20.95 cM
Strain
Comparison
more
  • SNPs within 2kb
    149 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650741
 lncRNA gene Chr11:35240896-35241612 (+)
129S1/SvImJ ENSMUSG00200007449
 lncRNA gene Chr11:32287874-32288590 (+)
A/J ENSMUSG00195007325
 lncRNA gene Chr11:32219148-32219864 (+)
AKR/J ENSMUSG00220003281
 lncRNA gene Chr11:32405152-32405868 (+)
BALB/cJ ENSMUSG00180001766
 lncRNA gene Chr11:32220268-32220984 (+)
C3H/HeJ ENSMUSG00175003774
 lncRNA gene Chr11:32190961-32191677 (+)
C57BL/6NJ ENSMUSG00215010236
 lncRNA gene Chr11:32141687-32142403 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005013096
 lncRNA gene Chr11:32054617-32055334 (+)
CBA/J ENSMUSG00210006824
 lncRNA gene Chr11:32076129-32076845 (+)
DBA/2J ENSMUSG00185010607
 lncRNA gene Chr11:32270256-32270972 (+)
FVB/NJ ENSMUSG00205012368
 lncRNA gene Chr11:32306333-32307049 (+)
JF1/MsJ ENSUMUG00000005705
 lncRNA gene Chr11:32586376-32587093 (+)
LP/J ENSMUSG00230003950
 lncRNA gene Chr11:33440678-33441394 (+)
NOD/ShiLtJ ENSMUSG00190007365
 lncRNA gene Chr11:32336399-32337116 (+)
NZO/HlLtJ ENSMUSG00225031004
 lncRNA gene Chr11:35379409-35380126 (+)
PWK/PhJ ENSLUMG00010007382
 lncRNA gene Chr11:32159972-32160689 (+)
SPRET/EiJ ENSMSPG00010002340
 lncRNA gene Chr11:32536559-32537273 (+)
WSB/EiJ ENSIUOG00005002104
 lncRNA gene Chr11:32236327-32237043 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele show increased susceptibility to dextran sulfate sodium-induced colitis and loss of diurnal rhythmicity in colitis severity after oxazolone treatment.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      20
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000086311 Ensembl Gene Model | MGI Sequence Detail 717 C57BL/6J ±  kb
    transcript ENSMUST00000124503 Ensembl | MGI Sequence Detail 454 Not Applicable  
    For the selected sequence
    Other
    Accession IDs
    less
    MGI:7541107
    References
    more
    • Summaries
      All 9
      Phenotypes 4
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:340220 Wang S, et al., An NF-kappaB-driven lncRNA orchestrates colitis and circadian clock. Sci Adv. 2020 Oct;6(42)
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/15/2026
    MGI 6.29     		The Jackson Laboratory