Msantd5 MGI Mouse Gene Detail - MGI:3650740 - Myb/SANT DNA binding domain containing 5

Sequence Map

Chr11:51111300-51125880 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650740	protein coding gene	Chr11:51111300-51130585 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002950	antisense lncRNA gene	Chr11:50452005-50453701 (+)
A/J	MGP_AJ_G0002927	antisense lncRNA gene	Chr11:48564387-48565975 (+)
AKR/J	MGP_AKRJ_G0002908	antisense lncRNA gene	Chr11:50089745-50091333 (+)
BALB/cJ	MGP_BALBcJ_G0002915	antisense lncRNA gene	Chr11:48863449-48865037 (+)
C3H/HeJ	MGP_C3HHeJ_G0002870	antisense lncRNA gene	Chr11:50124747-50126335 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003057	antisense lncRNA gene	Chr11:51994843-51996431 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002599	antisense lncRNA gene	Chr11:46139523-46141118 (+)
CAST/EiJ	MGP_CASTEiJ_G0002842	antisense lncRNA gene	Chr11:50107477-50111457 (+)
CBA/J	MGP_CBAJ_G0002867	antisense lncRNA gene	Chr11:54434027-54435615 (+)
DBA/2J	MGP_DBA2J_G0002874	antisense lncRNA gene	Chr11:48278601-48280189 (+)
FVB/NJ	MGP_FVBNJ_G0002892	antisense lncRNA gene	Chr11:47975258-47976846 (+)
LP/J	MGP_LPJ_G0002949	antisense lncRNA gene	Chr11:50880260-50881848 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0003060	antisense lncRNA gene	Chr11:50177179-50178766 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0002748	antisense lncRNA gene	Chr11:49912920-49915673 (+)
WSB/EiJ	no annotation

Vertebrate Orthology Source

Alliance of Genome Resources

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	ENSMUSG00000061469	Ensembl Gene Model \| MGI Sequence Detail	14581	C57BL/6J	± kb
transcript	ENSMUST00000126189	Ensembl \| MGI Sequence Detail	1462	Not Applicable
polypeptide	ENSMUSP00000155969	Ensembl \| MGI Sequence Detail	225	Not Applicable

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Summaries

All 11

Phenotypes 3
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Msantd5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101271	Chr11:51111387-51111413 (+)	100 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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