Gm13832 Gene Detail

Summary

• Symbol
  Gm13832
• Name
  predicted gene 13832
• Synonyms
  GtAyu21-129, Gt(Ayu21)129Imeg, Gt(pU21)129Imeg

• Feature Type
  lncRNA gene
• IDs
  MGI:3650708
  NCBI Gene: 118568797
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:115497147-115561474 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1752 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650708	lncRNA gene	Chr5:115497092-115563354 (+)
129S1/SvImJ	ENSMUSG00200024422	lncRNA gene	Chr5:109236444-109300235 (+)
A/J	ENSMUSG00195040515	lncRNA gene	Chr5:108757958-108822057 (+)
AKR/J	ENSMUSG00220052612	lncRNA gene	Chr5:108265824-108329637 (+)
BALB/cJ	ENSMUSG00180048571	lncRNA gene	Chr5:108887134-108950970 (+)
C3H/HeJ	ENSMUSG00175048734	lncRNA gene	Chr5:110874498-110938767 (+)
C57BL/6NJ	ENSMUSG00215038270	lncRNA gene	Chr5:108898068-108961896 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006161	lincRNA gene	Chr5:108301451-108337496 (+)
CAST/EiJ	ENSTCUG00005034721	lncRNA gene	Chr5:108075358-108138910 (+)
CBA/J	ENSMUSG00210046521	lncRNA gene	Chr5:109625890-109690158 (+)
DBA/2J	ENSMUSG00185054855	lncRNA gene	Chr5:112685196-112749002 (+)
FVB/NJ	ENSMUSG00205053327	lncRNA gene	Chr5:108524878-108589101 (+)
JF1/MsJ	ENSUMUG00000055329	lncRNA gene	Chr5:115505459-115569060 (+)
LP/J	ENSMUSG00230048932	lncRNA gene	Chr5:116774606-116838401 (+)
NOD/ShiLtJ	ENSMUSG00190049031	lncRNA gene	Chr5:108563890-108627641 (+)
NZO/HlLtJ	ENSMUSG00225017753	lncRNA gene	Chr5:124434613-124498412 (+)
PWK/PhJ	ENSLUMG00010042301	lncRNA gene	Chr5:107408054-107468850 (+)
SPRET/EiJ	ENSMSPG00010047836	lncRNA gene	Chr5:110689625-110751115 (+)
WSB/EiJ	ENSIUOG00005045083	lncRNA gene	Chr5:111267099-111331070 (+)

Homology

• Gene Tree
  Gm13832
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  61
• Chemically induced (other)
  1
• Gene trapped
  59
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13832
• Find Mice (IMSR)
  38 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  2

• Ensembl
  ENSMUSG00000087292 (Evidence)
• NCBI Gene
  118568797

Representative Sequences			Length	Strain/Species
genomic	118568797	NCBI Gene Model | MGI Sequence Detail	64328	C57BL/6J
transcript	NR_188770	RefSeq | MGI Sequence Detail	1095	C57BL/6

Other
Accession IDs

MGI:3629774

References

• Summaries
  All 18

  Phenotypes 10
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:255082 Kurogi S, et al., Development of an efficient screening system to identify novel bone metabolism-related genes using the exchangeable gene trap mutagenesis mouse models. Sci Rep. 2017 Jan 20;7:40692

TSS for Gm13832:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48226	Chr5:115542224-115542228 (+)	45,079 bp
Tssr48227	Chr5:115542596-115542639 (+)	45,471 bp