Gm11486 Pseudogene Detail

Summary

• Symbol
  Gm11486
• Name
  predicted gene 11486

• Feature Type
  pseudogene
• IDs
  MGI:3650706
  NCBI Gene: 100039726
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:73333538-73336927 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 36.06 cM

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650706	pseudogene	Chr4:73333538-73336927 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040352	pseudogene	Chr4:72631199-72633676 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040329	pseudogene	Chr4:70334301-70364502 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0040126	pseudogene	Chr4:69945982-69963666 (-)
FVB/NJ	MGP_FVBNJ_G0040081	pseudogene	Chr4:69028610-69033295 (-)
LP/J	MGP_LPJ_G0040173	pseudogene	Chr4:73034939-73039054 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040077	pseudogene	Chr4:81653458-81658484 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041023	pseudogene	Chr4:72072195-72075617 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm11486
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm11486
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10

• Ensembl
  ENSMUSG00000080222 (Evidence)
• NCBI Gene
  100039726

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080222	Ensembl Gene Model | MGI Sequence Detail	3390	C57BL/6J
transcript	ENSMUST00000107322	Ensembl | MGI Sequence Detail	478	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;