Msantd5f6 Gene Detail

Summary

• Symbol
  Msantd5f6
• Name
  Myb/SANT DNA binding domain containing 5 family member 6
• Synonyms
  Gm11487

• Feature Type
  protein coding gene
• IDs
  MGI:3650704
  NCBI Gene: 433719
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:73319269-73323309 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 36.06 cM

Strain
Comparison

• SNPs within 2kb
  259 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650704	protein coding gene	Chr4:73319269-73325641 (-)
129S1/SvImJ	ENSMUSG00200000395	protein coding gene	Chr4:68344544-68348584 (-)
A/J	ENSMUSG00195000884	protein coding gene	Chr4:68876168-68880208 (-)
AKR/J	ENSMUSG00220018542	protein coding gene	Chr4:68587259-68591298 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215000769	protein coding gene	Chr4:68734549-68738589 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014602	protein coding gene	Chr4:68417865-68421910 (-)
CBA/J	ENSMUSG00210000456	protein coding gene	Chr4:68375230-68379270 (-)
DBA/2J	ENSMUSG00185015069	protein coding gene	Chr4:68830381-68834421 (-)
FVB/NJ	ENSMUSG00205000994	protein coding gene	Chr4:67113833-67117873 (-)
JF1/MsJ	ENSUMUG00000000570	protein coding gene	Chr4:69505948-69509984 (-)
LP/J	ENSMUSG00230008649	protein coding gene	Chr4:72326085-72330125 (-)
NOD/ShiLtJ	ENSMUSG00190009132	protein coding gene	Chr4:67773656-67777696 (-)
NZO/HlLtJ	ENSMUSG00225027847	protein coding gene	Chr4:77332505-77336545 (-)
PWK/PhJ	ENSLUMG00010009567	protein coding gene	Chr4:67213325-67217364 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005000283	protein coding gene	Chr4:68205417-68209456 (-)

Homology

• Human Ortholog
  MSANTD5, Myb/SANT DNA binding domain containing 5

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  MSANTD5, Myb/SANT DNA binding domain containing 5
  
• Links
  HGNC:55184

  NCBI Gene ID: 102724657

  UniProt: A0A3B3IT52

  
  
• Chr Location
  chr5:178691534-178707472 (-)  GRCh38

---

• MGI Vertebrate Homology
  Msantd5f6 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: MSANTD5
• Gene Tree
  Msantd5f6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Msantd5f6
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  20 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  4
• UniProt
  1
• CCDS
  CCDS51205.1

• Ensembl
  ENSMUSG00000066137 (Evidence)
• NCBI Gene
  433719

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000066137	Ensembl Gene Model | MGI Sequence Detail	4041	C57BL/6J
transcript	ENSMUST00000084480	Ensembl | MGI Sequence Detail	1323	Not Applicable
polypeptide	ENSMUSP00000081520	Ensembl | MGI Sequence Detail	354	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:7514128

References

• Summaries
  All 15

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;