Msantd5f6 Gene Detail

Summary

• Symbol
  Msantd5f6
• Name
  Myb/SANT DNA binding domain containing 5 family member 6
• Synonyms
  Gm11487

• Feature Type
  protein coding gene
• IDs
  MGI:3650704
  NCBI Gene: 433719
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:73319269-73323309 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 36.06 cM

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650704	protein coding gene	Chr4:73319269-73325641 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0021360	protein coding gene	Chr14:50121340-50121756 (+)
AKR/J	MGP_AKRJ_G0021336	protein coding gene	Chr14:51920496-51920913 (+)
BALB/cJ	MGP_BALBcJ_G0021363	protein coding gene	Chr14:50110346-50110762 (+)
C3H/HeJ	MGP_C3HHeJ_G0021143	protein coding gene	Chr14:51566991-51572998 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0021803	protein coding gene	Chr14:53688628-53689045 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0028299	protein coding gene	Chr4:73034798-73035216 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021240	protein coding gene	Chr14:54653783-54654199 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0020235	protein coding gene	Chr14:47128026-47130541 (+)
WSB/EiJ	no annotation

Homology

• Human Ortholog
  MSANTD5, Myb/SANT DNA binding domain containing 5

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  MSANTD5, Myb/SANT DNA binding domain containing 5
  
• Links
  HGNC:55184

  NCBI Gene ID: 102724657

  neXtProt AC: NX_A0A3B3IT52

  UniProt: A0A3B3IT52

  
  
• Chr Location
  chr5:178691534-178707472 (-)  GRCh38

---

• MGI Vertebrate Homology
  Msantd5f6 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: MSANTD5
• Gene Tree
  Msantd5f6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Msantd5f6
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  20 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  4
• UniProt
  1
• CCDS
  CCDS51205.1

• Ensembl
  ENSMUSG00000066137 (Evidence)
• NCBI Gene
  433719

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000066137	Ensembl Gene Model | MGI Sequence Detail	4041	C57BL/6J
transcript	ENSMUST00000084480	Ensembl | MGI Sequence Detail	1323	Not Applicable
polypeptide	ENSMUSP00000081520	Ensembl | MGI Sequence Detail	354	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;