Gm11978 Pseudogene Detail

Summary

• Symbol
  Gm11978
• Name
  predicted gene 11978
• Synonyms
  100041311

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3650695
  NCBI Gene: 100041311
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:6600148-6610236 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 4.61 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  385 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650695	pseudogene	Chr11:6600137-6610305 (-)
129S1/SvImJ	ENSMUSG00200035253	pseudogene	Chr11:3547254-3557355 (-)
A/J	ENSMUSG00195024221	pseudogene	Chr11:3475544-3485662 (-)
AKR/J	ENSMUSG00220009078	pseudogene	Chr11:3505075-3515196 (-)
BALB/cJ	ENSMUSG00180029468	pseudogene	Chr11:3496712-3506795 (-)
C3H/HeJ	ENSMUSG00175010733	pseudogene	Chr11:3480006-3490096 (-)
C57BL/6NJ	ENSMUSG00215031409	pseudogene	Chr11:3489526-3499614 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036827	pseudogene	Chr11:3514845-3526396 (-)
CAST/EiJ	ENSTCUG00005039289	pseudogene	Chr11:3559298-3569378 (-)
CBA/J	ENSMUSG00210018543	pseudogene	Chr11:3478503-3488586 (-)
DBA/2J	ENSMUSG00185019363	pseudogene	Chr11:3576266-3586352 (-)
FVB/NJ	ENSMUSG00205037628	pseudogene	Chr11:3461141-3471217 (-)
JF1/MsJ	ENSUMUG00000047975	pseudogene	Chr11:3725180-3733182 (-)
LP/J	ENSMUSG00230035501	pseudogene	Chr11:4648932-4659010 (-)
NOD/ShiLtJ	ENSMUSG00190039550	pseudogene	Chr11:3468010-3478127 (-)
NZO/HlLtJ	ENSMUSG00225026425	pseudogene	Chr11:6681128-6691210 (-)
PWK/PhJ	ENSLUMG00010019232	pseudogene	Chr11:3474486-3484578 (-)
SPRET/EiJ	ENSMSPG00010009205	pseudogene	Chr11:3530817-3543186 (-)
WSB/EiJ	ENSIUOG00005007671	pseudogene	Chr11:3486706-3496796 (-)

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000086373 (Evidence), ENSMUSG00000121755 (Evidence)
• NCBI Gene
  100041311

Representative Sequences			Length	Strain/Species
genomic	100041311	NCBI Gene Model | MGI Sequence Detail	10089	C57BL/6J
transcript	NR_028586	RefSeq | MGI Sequence Detail	1306	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3650693, MGI:3781445

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm11978:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106762	Chr11:6610259-6610270 (-)	-29 bp
Tssr106761	Chr11:6610231-6610240 (-)	0 bp
Tssr106760	Chr11:6610209-6610223 (-)	20 bp