Gm13629 Gene Detail

Summary

• Symbol
  Gm13629
• Name
  predicted gene 13629

• Feature Type
  lncRNA gene
• IDs
  MGI:3650683
  NCBI Gene: 100038743
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:66271224-66377816 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 39.13 cM

Strain
Comparison

• SNPs within 2kb
  3517 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650683	lncRNA gene	Chr2:66271157-66378690 (+)
129S1/SvImJ	ENSMUSG00200037143	lncRNA gene	Chr2:63346136-63452173 (+)
A/J	ENSMUSG00195023622	lncRNA gene	Chr2:63467863-63574079 (+)
AKR/J	ENSMUSG00220041165	lncRNA gene	Chr2:63422057-63528261 (+)
BALB/cJ	ENSMUSG00180043309	lncRNA gene	Chr2:63426684-63532875 (+)
C3H/HeJ	ENSMUSG00175039765	lncRNA gene	Chr2:63502922-63608992 (+)
C57BL/6NJ	ENSMUSG00215035436	lncRNA gene	Chr2:63366148-63472354 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003192	antisense lncRNA gene	Chr2:61060245-61164749 (+)
CAST/EiJ	ENSTCUG00005009722	lncRNA gene	Chr2:62772244-62880232 (+)
CBA/J	ENSMUSG00210039729	lncRNA gene	Chr2:63545897-63651959 (+)
DBA/2J	ENSMUSG00185040747	lncRNA gene	Chr2:63401474-63507523 (+)
FVB/NJ	ENSMUSG00205040111	lncRNA gene	Chr2:62906766-63012959 (+)
JF1/MsJ	ENSUMUG00000007253	lncRNA gene	Chr2:63072323-63179376 (+)
LP/J	ENSMUSG00230023427	lncRNA gene	Chr2:65227855-65334049 (+)
NOD/ShiLtJ	ENSMUSG00190043003	lncRNA gene	Chr2:63465152-63571218 (+)
NZO/HlLtJ	ENSMUSG00225015513	lncRNA gene	Chr2:72950190-73056226 (+)
PWK/PhJ	ENSLUMG00010034786	lncRNA gene	Chr2:63219079-63332037 (+)
SPRET/EiJ	ENSMSPG00010038801	lncRNA gene	Chr2:64534372-64651445 (+)
WSB/EiJ	ENSIUOG00005019915	lncRNA gene	Chr2:63526238-63632236 (+)

Homology

• Gene Tree
  Gm13629
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13629
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000087301 (Evidence)
• NCBI Gene
  100038743

Representative Sequences			Length	Strain/Species
genomic	100038743	NCBI Gene Model | MGI Sequence Detail	106593	C57BL/6J
transcript	NR_033495	RefSeq | MGI Sequence Detail	1347	C57BL/6
polypeptide	Q3V3K8	UniProt | EBI | MGI Sequence Detail	95	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:237720 Koenig J, et al., Regulation of Nav1.7: A Conserved SCN9A Natural Antisense Transcript Expressed in Dorsal Root Ganglia. PLoS One. 2015;10(6):e0128830

TSS for Gm13629:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18000	Chr2:66271200-66271249 (+)	1 bp
Tssr18001	Chr2:66271257-66271273 (+)	41 bp