Rpl9-ps3 Pseudogene Detail

Summary

• Symbol
  Rpl9-ps3
• Name
  ribosomal protein L9, pseudogene 3
• Synonyms
  Gm12211

• Feature Type
  pseudogene
• IDs
  MGI:3650675
  NCBI Gene: 546500
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:53392011-53392586 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 31.95 cM

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650675	pseudogene	Chr11:53391966-53392688 (+)
129S1/SvImJ	ENSMUSG00200040505	pseudogene	Chr11:50387855-50388430 (+)
A/J	ENSMUSG00195038561	pseudogene	Chr11:50325111-50325686 (+)
AKR/J	ENSMUSG00220040602	pseudogene	Chr11:50513991-50514566 (+)
BALB/cJ	ENSMUSG00180038354	pseudogene	Chr11:50386551-50387126 (+)
C3H/HeJ	ENSMUSG00175038209	pseudogene	Chr11:50356400-50356975 (+)
C57BL/6NJ	ENSMUSG00215038257	pseudogene	Chr11:50179208-50179783 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044293	pseudogene	Chr11:49949557-49950132 (+)
CBA/J	ENSMUSG00210029944	pseudogene	Chr11:50212362-50212937 (+)
DBA/2J	ENSMUSG00185028309	pseudogene	Chr11:50424351-50424926 (+)
FVB/NJ	ENSMUSG00205037800	pseudogene	Chr11:50254694-50255269 (+)
JF1/MsJ	ENSUMUG00000048591	pseudogene	Chr11:50799943-50800518 (+)
LP/J	ENSMUSG00230050338	pseudogene	Chr11:51605527-51606102 (+)
NOD/ShiLtJ	ENSMUSG00190045293	pseudogene	Chr11:50489275-50489850 (+)
NZO/HlLtJ	ENSMUSG00225033137	pseudogene	Chr11:53646492-53647067 (+)
PWK/PhJ	ENSLUMG00010035039	pseudogene	Chr11:50249977-50250552 (+)
SPRET/EiJ	ENSMSPG00010020533	pseudogene	Chr11:50937686-50938251 (+)
WSB/EiJ	ENSIUOG00005042424	pseudogene	Chr11:50267118-50267693 (+)

Homology

• Gene Tree
  Rpl9-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl9-ps3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000085718 (Evidence)
• NCBI Gene
  546500

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085718	Ensembl Gene Model | MGI Sequence Detail	576	C57BL/6J
transcript	ENSMUST00000119147	Ensembl | MGI Sequence Detail	576	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Rpl9-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101407	Chr11:53391985-53391986 (+)	-25 bp