Gm13134 Gene Detail

Summary

• Symbol
  Gm13134
• Name
  predicted gene 13134

• Feature Type
  lncRNA gene
• IDs
  MGI:3650641
  NCBI Gene: 100043342
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:154685654-154688659 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 84.69 cM

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650641	lncRNA gene	Chr4:154685654-154688659 (+)
129S1/SvImJ	ENSMUSG00200019770	lncRNA gene	Chr4:145752841-145755846 (+)
A/J	ENSMUSG00195021101	lncRNA gene	Chr4:147407693-147410698 (+)
AKR/J	ENSMUSG00220027921	lncRNA gene	Chr4:146994288-146997293 (+)
BALB/cJ	ENSMUSG00180002737	lncRNA gene	Chr4:145067940-145070945 (+)
C3H/HeJ	ENSMUSG00175019125	lncRNA gene	Chr4:148374129-148377134 (+)
C57BL/6NJ	ENSMUSG00215028554	lncRNA gene	Chr4:147203581-147206586 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003613	antisense lncRNA gene	Chr4:144512181-144515109 (+)
CAST/EiJ	ENSTCUG00005036703	lncRNA gene	Chr4:151074691-151077696 (+)
CBA/J	ENSMUSG00210006409	lncRNA gene	Chr4:147032421-147035426 (+)
DBA/2J	ENSMUSG00185017258	lncRNA gene	Chr4:150590056-150593060 (+)
FVB/NJ	ENSMUSG00205021959	lncRNA gene	Chr4:145486206-145489211 (+)
JF1/MsJ	ENSUMUG00000000454	lncRNA gene	Chr4:153606053-153608979 (+)
LP/J	ENSMUSG00230025740	lncRNA gene	Chr4:157314428-157317433 (+)
NOD/ShiLtJ	ENSMUSG00190004218	lncRNA gene	Chr4:146689842-146692847 (+)
NZO/HlLtJ	ENSMUSG00225024645	lncRNA gene	Chr4:161310907-161313833 (+)
PWK/PhJ	ENSLUMG00010028934	lncRNA gene	Chr4:145867706-145870629 (+)
SPRET/EiJ	ENSMSPG00010026573	lncRNA gene	Chr4:147822695-147825626 (+)
WSB/EiJ	ENSIUOG00005006879	lncRNA gene	Chr4:144899768-144902774 (+)

Homology

• Gene Tree
  Gm13134
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  1
• Targeted
  3
• Genomic Mutations
  3 involving Gm13134
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000084987 (Evidence)
• NCBI Gene
  100043342

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084987	Ensembl Gene Model | MGI Sequence Detail	3006	C57BL/6J
transcript	ENSMUST00000132106	Ensembl | MGI Sequence Detail	738	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16

TSS for Gm13134:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40589	Chr4:154685756-154685759 (+)	104 bp