Gm14023 Gene Detail

Summary

• Symbol
  Gm14023
• Name
  predicted gene 14023

• Feature Type
  lncRNA gene
• IDs
  MGI:3650639
  NCBI Gene: 100503468
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:129139290-129149746 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 62.90 cM

Strain
Comparison

• SNPs within 2kb
  280 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650639	lncRNA gene	Chr2:129139285-129217678 (+)
129S1/SvImJ	ENSMUSG00200049148	lncRNA gene	Chr2:126181765-126192413 (+)
A/J	ENSMUSG00195031337	lncRNA gene	Chr2:126213639-126224110 (+)
AKR/J	ENSMUSG00220045955	lncRNA gene	Chr2:125975519-125986164 (+)
BALB/cJ	ENSMUSG00180049119	lncRNA gene	Chr2:126016048-126026682 (+)
C3H/HeJ	ENSMUSG00175046797	lncRNA gene	Chr2:126554890-126565518 (+)
C57BL/6NJ	ENSMUSG00215038378	lncRNA gene	Chr2:126061840-126072306 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013602	unclassified non-coding RNA gene	Chr2:122124278-122135048 (+)
CAST/EiJ	ENSTCUG00005041201	lncRNA gene	Chr2:125352502-125362989 (+)
CBA/J	ENSMUSG00210037457	lncRNA gene	Chr2:126411805-126422436 (+)
DBA/2J	ENSMUSG00185035492	lncRNA gene	Chr2:126066722-126077178 (+)
FVB/NJ	ENSMUSG00205042370	lncRNA gene	Chr2:125230128-125240770 (+)
JF1/MsJ	ENSUMUG00000029700	lncRNA gene	Chr2:125905379-125915883 (+)
LP/J	ENSMUSG00230039222	lncRNA gene	Chr2:127817042-127827690 (+)
NOD/ShiLtJ	ENSMUSG00190015765	lncRNA gene	Chr2:126166675-126177113 (+)
NZO/HlLtJ	ENSMUSG00225027704	lncRNA gene	Chr2:135725981-135736438 (+)
PWK/PhJ	ENSLUMG00010043732	lncRNA gene	Chr2:125824675-125835097 (+)
SPRET/EiJ	ENSMSPG00010033638	lncRNA gene	Chr2:128221683-128232105 (+)
WSB/EiJ	ENSIUOG00005045895	lncRNA gene	Chr2:125989540-126000203 (+)

Homology

• Gene Tree
  Gm14023
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm14023
• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000085498 (Evidence)
• NCBI Gene
  100503468

Representative Sequences			Length	Strain/Species
genomic	100503468	NCBI Gene Model | MGI Sequence Detail	10457	C57BL/6J
transcript	NR_040371	RefSeq | MGI Sequence Detail	1781	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:389144 Daniels MJD, et al., CRISPR/Cas9 mediated mutation of mouse IL-1alpha nuclear localisation sequence abolishes expression. Sci Rep. 2017 Dec 6;7(1):17077

TSS for Gm14023:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20110	Chr2:129139281-129139296 (+)	-1 bp
Tssr20111	Chr2:129142353-129142364 (+)	3,069 bp