Gm12406 Gene Detail

Summary

• Symbol
  Gm12406
• Name
  predicted gene 12406

• Feature Type
  lncRNA gene
• IDs
  MGI:3650626
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:41638599-41647601 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 21.80 cM

Strain
Comparison

• SNPs within 2kb
  273 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650626	lncRNA gene	Chr4:41638599-41647601 (+)
129S1/SvImJ	ENSMUSG00200005650	lncRNA gene	Chr4:38486937-38488975 (+)
A/J	ENSMUSG00195003513	lncRNA gene	Chr4:38858025-38860073 (+)
AKR/J	ENSMUSG00220036255	lncRNA gene	Chr4:38686579-38688617 (+)
BALB/cJ	ENSMUSG00180027533	lncRNA gene	Chr4:38444847-38446895 (+)
C3H/HeJ	ENSMUSG00175024366	lncRNA gene	Chr4:38823451-38825499 (+)
C57BL/6NJ	ENSMUSG00215035062	lncRNA gene	Chr4:38460670-38462708 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003495	antisense lncRNA gene	Chr4:35740378-35742431 (+)
CAST/EiJ	ENSTCUG00005004801	lncRNA gene	Chr4:38320711-38322749 (+)
CBA/J	ENSMUSG00210008013	lncRNA gene	Chr4:38524357-38526405 (+)
DBA/2J	ENSMUSG00185006647	lncRNA gene	Chr4:38598133-38600181 (+)
FVB/NJ	ENSMUSG00205030342	lncRNA gene	Chr4:38148985-38151033 (+)
JF1/MsJ	ENSUMUG00000032237	lncRNA gene	Chr4:38542782-38544824 (+)
LP/J	ENSMUSG00230043110	lncRNA gene	Chr4:41980479-41982517 (+)
NOD/ShiLtJ	ENSMUSG00190006027	lncRNA gene	Chr4:38547794-38549832 (+)
NZO/HlLtJ	ENSMUSG00225007147	lncRNA gene	Chr4:45856836-45858874 (+)
PWK/PhJ	ENSLUMG00010006700	lncRNA gene	Chr4:38097168-38099206 (+)
SPRET/EiJ	ENSMSPG00010025043	lncRNA gene	Chr4:39048998-39051039 (+)
WSB/EiJ	ENSIUOG00005050153	lncRNA gene	Chr4:38402555-38404593 (+)

Homology

• Gene Tree
  Gm12406
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12406
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30

• Ensembl
  ENSMUSG00000084761 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084761	Ensembl Gene Model | MGI Sequence Detail	9003	C57BL/6J
transcript	ENSMUST00000141120	Ensembl | MGI Sequence Detail	1289	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12406:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36884	Chr4:41639358-41639405 (+)	783 bp