Gm11942 Pseudogene Detail

Summary

• Symbol
  Gm11942
• Name
  predicted gene 11942

• Feature Type
  pseudogene
• IDs
  MGI:3650608
  NCBI Gene: 665298
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:32964888-32965232 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 14.56 cM

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650608	pseudogene	Chr4:32964806-32965273 (+)
129S1/SvImJ	ENSMUSG00200012627	pseudogene	Chr4:29659324-29659668 (+)
A/J	ENSMUSG00195000209	pseudogene	Chr4:30178640-30178984 (+)
AKR/J	ENSMUSG00220014641	pseudogene	Chr4:29970962-29971306 (+)
BALB/cJ	ENSMUSG00180000298	pseudogene	Chr4:29681755-29682099 (+)
C3H/HeJ	ENSMUSG00175002344	pseudogene	Chr4:30143591-30143935 (+)
C57BL/6NJ	ENSMUSG00215000961	pseudogene	Chr4:29765546-29765890 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000347	pseudogene	Chr4:29647301-29647645 (+)
CBA/J	ENSMUSG00210004577	pseudogene	Chr4:29868215-29868559 (+)
DBA/2J	ENSMUSG00185000396	pseudogene	Chr4:29940666-29941010 (+)
FVB/NJ	ENSMUSG00205000563	pseudogene	Chr4:29525809-29526153 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230001209	pseudogene	Chr4:33237192-33237536 (+)
NOD/ShiLtJ	ENSMUSG00190000546	pseudogene	Chr4:29865002-29865346 (+)
NZO/HlLtJ	ENSMUSG00225008878	pseudogene	Chr4:37180263-37180607 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010002473	pseudogene	Chr4:30271491-30271835 (+)
WSB/EiJ	ENSIUOG00005005172	pseudogene	Chr4:29664587-29664931 (+)

Homology

• Gene Tree
  Gm11942
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically and radiation induced
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm11942
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000094344 (Evidence)
• NCBI Gene
  665298

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094344	Ensembl Gene Model | MGI Sequence Detail	345	C57BL/6J
transcript	ENSMUST00000180255	Ensembl | MGI Sequence Detail	345	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm11942:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36723	Chr4:32964767-32964818 (+)	-95 bp