Rps13-ps5 Pseudogene Detail

Summary

• Symbol
  Rps13-ps5
• Name
  ribosomal protein S13, pseudogene 5
• Synonyms
  Gm12270

• Feature Type
  pseudogene
• IDs
  MGI:3650602
  NCBI Gene: 668239
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:61096546-61097001 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 37.96 cM

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650602	pseudogene	Chr11:61096506-61097027 (-)
129S1/SvImJ	ENSMUSG00200037116	pseudogene	Chr11:58021195-58021650 (-)
A/J	ENSMUSG00195044250	pseudogene	Chr11:58055822-58056277 (-)
AKR/J	ENSMUSG00220050798	pseudogene	Chr11:58163285-58163740 (-)
BALB/cJ	ENSMUSG00180050089	pseudogene	Chr11:58109233-58109688 (-)
C3H/HeJ	ENSMUSG00175049156	pseudogene	Chr11:58073064-58073519 (-)
C57BL/6NJ	ENSMUSG00215040229	pseudogene	Chr11:57815994-57816449 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048040	pseudogene	Chr11:57604089-57604544 (-)
CBA/J	ENSMUSG00210039696	pseudogene	Chr11:57906109-57906564 (-)
DBA/2J	ENSMUSG00185045160	pseudogene	Chr11:58095541-58095996 (-)
FVB/NJ	ENSMUSG00205051161	pseudogene	Chr11:57980175-57980630 (-)
JF1/MsJ	ENSUMUG00000049345	pseudogene	Chr11:58506619-58507066 (-)
LP/J	ENSMUSG00230050425	pseudogene	Chr11:59242478-59242933 (-)
NOD/ShiLtJ	ENSMUSG00190051809	pseudogene	Chr11:58089757-58090212 (-)
NZO/HlLtJ	ENSMUSG00225048347	pseudogene	Chr11:61385959-61386414 (-)
PWK/PhJ	ENSLUMG00010037717	pseudogene	Chr11:58028149-58028604 (-)
SPRET/EiJ	ENSMSPG00010043605	pseudogene	Chr11:58697607-58698066 (-)
WSB/EiJ	ENSIUOG00005040136	pseudogene	Chr11:58012897-58013352 (-)

Homology

• Gene Tree
  Rps13-ps5
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Rps13-ps5
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082626 (Evidence)
• NCBI Gene
  668239

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082626	Ensembl Gene Model | MGI Sequence Detail	456	C57BL/6J
transcript	ENSMUST00000117939	Ensembl | MGI Sequence Detail	456	Not Applicable

References

• Summaries
  All 19

  Diseases 2

  Phenotypes 13
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:185284 Lacaria M, et al., Enriched rearing improves behavioral responses of an animal model for CNV-based autistic-like traits. Hum Mol Genet. 2012 Jul 15;21(14):3083-96

TSS for Rps13-ps5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108331	Chr11:61097019-61097029 (-)	-23 bp