Gm12416 Pseudogene Detail

Summary

• Symbol
  Gm12416
• Name
  predicted gene 12416

• Feature Type
  pseudogene
• IDs
  MGI:3650588
  NCBI Gene: 668010
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:84023132-84024139 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 39.75 cM

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650588	pseudogene	Chr4:84023114-84024351 (+)
129S1/SvImJ	ENSMUSG00200000920	pseudogene	Chr4:78943515-78944522 (+)
A/J	ENSMUSG00195006319	pseudogene	Chr4:79539132-79540139 (+)
AKR/J	ENSMUSG00220008117	pseudogene	Chr4:78941622-78942629 (+)
BALB/cJ	ENSMUSG00180008426	pseudogene	Chr4:78503887-78504894 (+)
C3H/HeJ	ENSMUSG00175004144	pseudogene	Chr4:79430706-79431713 (+)
C57BL/6NJ	ENSMUSG00215002301	pseudogene	Chr4:79387804-79388811 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000931	pseudogene	Chr4:78856162-78857167 (+)
CBA/J	ENSMUSG00210001282	pseudogene	Chr4:79024626-79025633 (+)
DBA/2J	ENSMUSG00185000775	pseudogene	Chr4:79616803-79617810 (+)
FVB/NJ	ENSMUSG00205001457	pseudogene	Chr4:77899802-77900809 (+)
JF1/MsJ	ENSUMUG00000030158	pseudogene	Chr4:79891928-79892933 (+)
LP/J	ENSMUSG00230018462	pseudogene	Chr4:83025000-83026007 (+)
NOD/ShiLtJ	ENSMUSG00190000961	pseudogene	Chr4:78472841-78473848 (+)
NZO/HlLtJ	ENSMUSG00225005570	pseudogene	Chr4:88140946-88141953 (+)
PWK/PhJ	ENSLUMG00010001678	pseudogene	Chr4:77733201-77734206 (+)
SPRET/EiJ	ENSMSPG00010007933	pseudogene	Chr4:79384951-79385956 (+)
WSB/EiJ	ENSIUOG00005009986	pseudogene	Chr4:78809407-78810414 (+)

Homology

• Gene Tree
  Gm12416
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12416
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083044 (Evidence)
• NCBI Gene
  668010

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083044	Ensembl Gene Model | MGI Sequence Detail	1008	C57BL/6J
transcript	ENSMUST00000120911	Ensembl | MGI Sequence Detail	1008	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12416:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37697	Chr4:84023062-84023066 (+)	-68 bp