Lrrc55os Gene Detail

Summary

• Symbol
  Lrrc55os
• Name
  leucine rich repeat containing 55, opposite strand
• Synonyms
  Gm13713, Lrrc55-AS

• Feature Type
  lncRNA gene
• IDs
  MGI:3650490
  NCBI Gene: 118568577
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:85002869-85004284 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.48 cM

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650490	lncRNA gene	Chr2:84923589-85038236 (+)
129S1/SvImJ	ENSMUSG00200054001	lncRNA gene	Chr2:82007694-82040486 (+)
A/J	ENSMUSG00195053326	lncRNA gene	Chr2:82110065-82142709 (+)
AKR/J	ENSMUSG00220052643	lncRNA gene	Chr2:81988794-82021441 (+)
BALB/cJ	ENSMUSG00180054915	lncRNA gene	Chr2:82037886-82070502 (+)
C3H/HeJ	ENSMUSG00175054099	lncRNA gene	Chr2:82177452-82210085 (+)
C57BL/6NJ	ENSMUSG00215053957	lncRNA gene	Chr2:82092816-82125564 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003218	antisense lncRNA gene	Chr2:79361738-79393334 (+)
CAST/EiJ	ENSTCUG00005052850	lncRNA gene	Chr2:81533652-81566351 (+)
CBA/J	ENSMUSG00210043047	lncRNA gene	Chr2:82205353-82237997 (+)
DBA/2J	ENSMUSG00185057244	lncRNA gene	Chr2:82034108-82066743 (+)
FVB/NJ	ENSMUSG00205052075	lncRNA gene	Chr2:81416443-81452830 (+)
JF1/MsJ	ENSUMUG00000034045	lncRNA gene	Chr2:81956067-81988961 (+)
LP/J	ENSMUSG00230045385	lncRNA gene	Chr2:83785192-83817810 (+)
NOD/ShiLtJ	ENSMUSG00190050828	lncRNA gene	Chr2:82074636-82107480 (+)
NZO/HlLtJ	ENSMUSG00225003328	lncRNA gene	Chr2:91669762-91702576 (+)
PWK/PhJ	ENSLUMG00010051701	lncRNA gene	Chr2:81972743-82007225 (+)
SPRET/EiJ	ENSMSPG00010052186	lncRNA gene	Chr2:83894490-83928395 (+)
WSB/EiJ	ENSIUOG00005053379	lncRNA gene	Chr2:82018681-82051272 (+)

Homology

• Gene Tree
  Lrrc55os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotypes from 1 allele in 1 genetic background
  3 phenotypes from multigenic genotypes
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Targeted
  2
• Genomic Mutations
  3 involving Lrrc55os
• Find Mice (IMSR)
  0 strains or lines available
• Comparison Matrix
  Gene Expression + Phenotype

Expression

• Assay Results
  597

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  1

• Ensembl
  ENSMUSG00000085135 (Evidence)
• NCBI Gene
  118568577

Representative Sequences			Length	Strain/Species
genomic	118568577	NCBI Gene Model | MGI Sequence Detail	1416	C57BL/6J
transcript	XR_004941137	RefSeq | MGI Sequence Detail	434	C57BL/6J

Other
Accession IDs

MGI:6477016

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:293325 Zhou Y, et al., Interferon-inducible cytoplasmic lncLrrc55-AS promotes antiviral innate responses by strengthening IRF3 phosphorylation. Cell Res. 2019 Aug;29(8):641-654