Gm11780 Pseudogene Detail

Summary

• Symbol
  Gm11780
• Name
  predicted gene 11780

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3650485
  NCBI Gene: 622019
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:4528204-4528719 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 2.54 cM

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650485	pseudogene	Chr4:4527771-4529457 (-)
129S1/SvImJ	ENSMUSG00200000790	protein coding gene	Chr4:1153661-1155377 (-)
129S1/SvImJ	ENSMUSG00200001308	pseudogene	Chr4:1154105-1154620 (-)
A/J	ENSMUSG00195002931	pseudogene	Chr4:1598302-1598817 (-)
AKR/J	ENSMUSG00220001305	pseudogene	Chr4:1408737-1409252 (-)
AKR/J	ENSMUSG00220001122	protein coding gene	Chr4:1408293-1410009 (-)
BALB/cJ	ENSMUSG00180004514	protein coding gene	Chr4:1149941-1151657 (-)
BALB/cJ	ENSMUSG00180004730	pseudogene	Chr4:1150385-1150900 (-)
C3H/HeJ	ENSMUSG00175016025	protein coding gene	Chr4:1673095-1674811 (-)
C3H/HeJ	ENSMUSG00175017628	pseudogene	Chr4:1673539-1674054 (-)
C57BL/6NJ	ENSMUSG00215004486	protein coding gene	Chr4:1255499-1257215 (-)
C57BL/6NJ	ENSMUSG00215004530	pseudogene	Chr4:1255943-1256458 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011137	pseudogene	Chr4:967364-967879 (-)
CAST/EiJ	ENSTCUG00005026745	pseudogene	Chr4:1469308-1469823 (-)
CBA/J	ENSMUSG00210002272	protein coding gene	Chr4:1414632-1416348 (-)
CBA/J	ENSMUSG00210002640	pseudogene	Chr4:1415076-1415591 (-)
DBA/2J	ENSMUSG00185002558	pseudogene	Chr4:1536412-1536927 (-)
DBA/2J	ENSMUSG00185002266	protein coding gene	Chr4:1535968-1537684 (-)
FVB/NJ	ENSMUSG00205003461	pseudogene	Chr4:1182322-1182837 (-)
FVB/NJ	ENSMUSG00205003370	protein coding gene	Chr4:1181878-1183594 (-)
JF1/MsJ	ENSUMUG00000002787	pseudogene	Chr4:1717945-1718460 (-)
LP/J	ENSMUSG00230008417	pseudogene	Chr4:4707119-4707634 (-)
LP/J	ENSMUSG00230008372	protein coding gene	Chr4:4706675-4708391 (-)
NOD/ShiLtJ	ENSMUSG00190014122	pseudogene	Chr4:1237338-1237853 (-)
NOD/ShiLtJ	ENSMUSG00190012563	protein coding gene	Chr4:1236894-1238610 (-)
NZO/HlLtJ	ENSMUSG00225000811	pseudogene	Chr4:8685922-8686437 (-)
NZO/HlLtJ	ENSMUSG00225000730	protein coding gene	Chr4:8685478-8687194 (-)
PWK/PhJ	ENSLUMG00010006030	pseudogene	Chr4:1196353-1196868 (-)
SPRET/EiJ	ENSMSPG00010003074	pseudogene	Chr4:1333395-1333910 (-)
WSB/EiJ	ENSIUOG00005014411	pseudogene	Chr4:1173457-1173972 (-)

Homology

• Gene Tree
  Gm11780
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  2

• Ensembl
  ENSMUSG00000085155 (Evidence)
• NCBI Gene
  622019

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085155	Ensembl Gene Model | MGI Sequence Detail	516	C57BL/6J
transcript	ENSMUST00000136880	Ensembl | MGI Sequence Detail	516	Not Applicable
polypeptide	NP_001264848	RefSeq | MGI Sequence Detail	171	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm11780:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40839	Chr4:4529437-4529464 (-)	-732 bp