Il1bos Gene Detail

Summary

• Symbol
  Il1bos
• Name
  interleukin 1 beta, opposite strand
• Synonyms
  Gm14047

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3650458
  NCBI Gene: 329514
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:129211822-129217653 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 62.98 cM

Strain
Comparison

• SNPs within 2kb
  268 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650458	antisense lncRNA gene	Chr2:129202240-129218083 (+)
129S1/SvImJ	ENSMUSG00200049202	lncRNA gene	Chr2:126254492-126260339 (+)
A/J	ENSMUSG00195031413	lncRNA gene	Chr2:126286190-126292041 (+)
AKR/J	ENSMUSG00220046022	lncRNA gene	Chr2:126048232-126054079 (+)
BALB/cJ	ENSMUSG00180049161	lncRNA gene	Chr2:126089075-126095087 (+)
C3H/HeJ	ENSMUSG00175046897	lncRNA gene	Chr2:126627634-126633484 (+)
C57BL/6NJ	ENSMUSG00215038466	lncRNA gene	Chr2:126134390-126140241 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003254	antisense lncRNA gene	Chr2:122192378-122198045 (+)
CAST/EiJ	ENSTCUG00005041177	lncRNA gene	Chr2:125425424-125431192 (+)
CBA/J	ENSMUSG00210037613	lncRNA gene	Chr2:126484532-126490382 (+)
DBA/2J	ENSMUSG00185035548	lncRNA gene	Chr2:126139256-126145108 (+)
FVB/NJ	ENSMUSG00205042533	lncRNA gene	Chr2:125302849-125308696 (+)
JF1/MsJ	ENSUMUG00000029581	lncRNA gene	Chr2:125978519-125984286 (+)
LP/J	ENSMUSG00230039259	lncRNA gene	Chr2:127889758-127895605 (+)
NOD/ShiLtJ	ENSMUSG00190015815	lncRNA gene	Chr2:126239184-126245036 (+)
NZO/HlLtJ	ENSMUSG00225027715	lncRNA gene	Chr2:135798516-135804363 (+)
PWK/PhJ	ENSLUMG00010043835	lncRNA gene	Chr2:125897392-125903326 (+)
SPRET/EiJ	ENSMSPG00010033742	lncRNA gene	Chr2:128296804-128302525 (+)
WSB/EiJ	ENSIUOG00005045954	lncRNA gene	Chr2:126070858-126076715 (+)

Homology

• Gene Tree
  Il1bos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Il1bos
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074805 (Evidence)
• NCBI Gene
  329514

Representative Sequences			Length	Strain/Species
genomic	329514	NCBI Gene Model | MGI Sequence Detail	5832	C57BL/6J
transcript	NR_015474	RefSeq | MGI Sequence Detail	1396	C57BL/6
polypeptide	Q8C678	UniProt | EBI | MGI Sequence Detail	102	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Il1bos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20123	Chr2:129213400-129213411 (+)	1,584 bp
Tssr20124	Chr2:129213855-129213866 (+)	2,039 bp