Gm12690 Gene Detail

Summary

• Symbol
  Gm12690
• Name
  predicted gene 12690

• Feature Type
  lncRNA gene
• IDs
  MGI:3650444
  NCBI Gene: 638890
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:99457697-99517078 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.71 cM

Strain
Comparison

• SNPs within 2kb
  1752 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650444	lncRNA gene	Chr4:99457697-99517078 (+)
129S1/SvImJ	ENSMUSG00200031481	lncRNA gene	Chr4:94441418-94445660 (+)
A/J	ENSMUSG00195008401	lncRNA gene	Chr4:94979843-94984089 (+)
AKR/J	ENSMUSG00220006564	lncRNA gene	Chr4:94444419-94448665 (+)
BALB/cJ	ENSMUSG00180035537	lncRNA gene	Chr4:93925180-93929426 (+)
C3H/HeJ	ENSMUSG00175015178	lncRNA gene	Chr4:94887391-94891637 (+)
C57BL/6NJ	ENSMUSG00215019128	lncRNA gene	Chr4:94831456-94835698 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005885	lincRNA gene	Chr4:91717780-91722162 (+)
CAST/EiJ	ENSTCUG00005007438	lncRNA gene	Chr4:94138195-94142464 (+)
CBA/J	ENSMUSG00210029506	lncRNA gene	Chr4:94452897-94457143 (+)
DBA/2J	ENSMUSG00185022907	lncRNA gene	Chr4:95228670-95232912 (+)
FVB/NJ	ENSMUSG00205016669	lncRNA gene	Chr4:93440029-93444274 (+)
JF1/MsJ	ENSUMUG00000041577	lncRNA gene	Chr4:95340453-95344686 (+)
LP/J	ENSMUSG00230022889	lncRNA gene	Chr4:98550879-98555121 (+)
NOD/ShiLtJ	ENSMUSG00190034291	lncRNA gene	Chr4:93914211-93918453 (+)
NZO/HlLtJ	ENSMUSG00225033217	lncRNA gene	Chr4:103678626-103682872 (+)
PWK/PhJ	ENSLUMG00010018506	lncRNA gene	Chr4:93040218-93044462 (+)
SPRET/EiJ	ENSMSPG00010008695	lncRNA gene	Chr4:95274165-95277788 (+)
WSB/EiJ	ENSIUOG00005003068	lncRNA gene	Chr4:94228064-94232310 (+)

Homology

• Gene Tree
  Gm12690
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12690
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000087332 (Evidence)
• NCBI Gene
  638890

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087332	Ensembl Gene Model | MGI Sequence Detail	59382	C57BL/6J
transcript	ENSMUST00000132108	Ensembl | MGI Sequence Detail	1485	Not Applicable

References

• Summaries
  All 13

  Phenotypes 7
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12690:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37934	Chr4:99457755-99457771 (+)	66 bp