Gm12854 Pseudogene Detail

Summary

• Symbol
  Gm12854
• Name
  predicted gene 12854

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3650410
  NCBI Gene: 102637129
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:115924465-115924761 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.10 cM

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650410	pseudogene	Chr4:115924379-115926099 (+)
129S1/SvImJ	ENSMUSG00200050516	pseudogene	Chr4:109819863-109820159 (+)
A/J	ENSMUSG00195047935	pseudogene	Chr4:111090605-111090901 (+)
AKR/J	ENSMUSG00220012396	pseudogene	Chr4:110432208-110432504 (+)
BALB/cJ	ENSMUSG00180047937	pseudogene	Chr4:109163914-109164210 (+)
C3H/HeJ	ENSMUSG00175044044	pseudogene	Chr4:110178340-110178636 (+)
C57BL/6NJ	ENSMUSG00215034593	pseudogene	Chr4:111247727-111248023 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023125	pseudogene	Chr4:109948053-109948349 (+)
CBA/J	ENSMUSG00210053330	pseudogene	Chr4:109791856-109792152 (+)
DBA/2J	ENSMUSG00185050825	pseudogene	Chr4:111316348-111316644 (+)
FVB/NJ	ENSMUSG00205042690	pseudogene	Chr4:109261392-109261688 (+)
JF1/MsJ	ENSUMUG00000049062	pseudogene	Chr4:111211675-111211971 (+)
LP/J	ENSMUSG00230046244	pseudogene	Chr4:114637175-114637471 (+)
NOD/ShiLtJ	ENSMUSG00190047593	pseudogene	Chr4:109160223-109160519 (+)
NZO/HlLtJ	ENSMUSG00225011701	pseudogene	Chr4:120124293-120124589 (+)
PWK/PhJ	ENSLUMG00010049037	pseudogene	Chr4:108618060-108618356 (+)
SPRET/EiJ	ENSMSPG00010029954	pseudogene	Chr4:110687945-110688241 (+)
SPRET/EiJ	ENSMSPG00010014895	pseudogene	Chr1:8315076-8315372 (+)
WSB/EiJ	ENSIUOG00005043987	pseudogene	Chr4:109479820-109480107 (+)

Homology

• Gene Tree
  Gm12854
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12854
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000078238 (Evidence)
• NCBI Gene
  102637129

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078238	Ensembl Gene Model | MGI Sequence Detail	297	C57BL/6J
transcript	ENSMUST00000128518	Ensembl | MGI Sequence Detail	297	Not Applicable
polypeptide	XP_036020519	RefSeq | MGI Sequence Detail	119	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12854:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38491	Chr4:115924390-115924405 (+)	-67 bp
Tssr38492	Chr4:115924420-115924429 (+)	-40 bp