Gm11676 Pseudogene Detail

Summary

• Symbol
  Gm11676
• Name
  predicted gene 11676

• Feature Type
  pseudogene
• IDs
  MGI:3650355
  NCBI Gene: 100041559
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:111503643-111504132 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 75.26 cM

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650355	pseudogene	Chr11:111503643-111504132 (-)
129S1/SvImJ	ENSMUSG00200033656	pseudogene	Chr11:108848419-108848908 (-)
A/J	ENSMUSG00195022262	pseudogene	Chr11:108560277-108560766 (-)
AKR/J	ENSMUSG00220035449	pseudogene	Chr11:108677528-108678017 (-)
BALB/cJ	ENSMUSG00180020342	pseudogene	Chr11:108870487-108870976 (-)
C3H/HeJ	ENSMUSG00175013429	pseudogene	Chr11:108812774-108813263 (-)
C57BL/6NJ	ENSMUSG00215017495	pseudogene	Chr11:108347535-108348024 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009724	pseudogene	Chr11:107467680-107468170 (-)
CAST/EiJ	ENSTCUG00005041046	pseudogene	Chr11:108240356-108240845 (-)
CBA/J	ENSMUSG00210013808	pseudogene	Chr11:108533132-108533621 (-)
DBA/2J	ENSMUSG00185021173	pseudogene	Chr11:108860295-108860784 (-)
FVB/NJ	ENSMUSG00205040236	pseudogene	Chr11:108696054-108696543 (-)
JF1/MsJ	ENSUMUG00000028714	pseudogene	Chr11:109108252-109108741 (-)
LP/J	ENSMUSG00230034957	pseudogene	Chr11:109921602-109922091 (-)
NOD/ShiLtJ	ENSMUSG00190023254	pseudogene	Chr11:108862068-108862557 (-)
NZO/HlLtJ	ENSMUSG00225053727	pseudogene	Chr11:111966793-111967282 (-)
PWK/PhJ	ENSLUMG00010016751	pseudogene	Chr11:108646411-108646900 (-)
SPRET/EiJ	ENSMSPG00010039699	pseudogene	Chr11:109133570-109134059 (-)
WSB/EiJ	ENSIUOG00005018550	pseudogene	Chr11:108603387-108603876 (-)

Homology

• Gene Tree
  Gm11676
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm11676
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082448 (Evidence)
• NCBI Gene
  100041559

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082448	Ensembl Gene Model | MGI Sequence Detail	490	C57BL/6J
transcript	ENSMUST00000120443	Ensembl | MGI Sequence Detail	490	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:332097 Chen Q, et al., Integration of 3D genome topology and local chromatin features uncovers enhancers underlying craniofacial-specific cartilage defects. Sci Adv. 2022 Nov 25;8(47):eabo3648