Gm12500 Gene Detail

Summary

• Symbol
  Gm12500
• Name
  predicted gene 12500

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3650304
  NCBI Gene: 791415
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:107993292-107995327 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.83 cM

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650304	protein coding gene	Chr3:107992900-107995327 (+)
129S1/SvImJ	ENSMUSG00200035679	lncRNA gene	Chr3:104608876-104611303 (+)
A/J	ENSMUSG00195026254	lncRNA gene	Chr3:105035312-105037739 (+)
AKR/J	ENSMUSG00220033423	lncRNA gene	Chr3:103398941-103401368 (+)
BALB/cJ	ENSMUSG00180019716	lncRNA gene	Chr3:104980657-104983084 (+)
C3H/HeJ	ENSMUSG00175031008	lncRNA gene	Chr3:104515433-104517860 (+)
C57BL/6NJ	ENSMUSG00215030634	lncRNA gene	Chr3:105243299-105245726 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003426	antisense lncRNA gene	Chr3:102296260-102298687 (+)
CAST/EiJ	ENSTCUG00005027968	lncRNA gene	Chr3:105514335-105516763 (+)
CBA/J	ENSMUSG00210008948	lncRNA gene	Chr3:105137290-105139717 (+)
DBA/2J	ENSMUSG00185022473	lncRNA gene	Chr3:105606627-105609054 (+)
FVB/NJ	ENSMUSG00205029731	lncRNA gene	Chr3:104173294-104175721 (+)
JF1/MsJ	ENSUMUG00000005375	lncRNA gene	Chr3:104582341-104584775 (+)
LP/J	ENSMUSG00230021502	lncRNA gene	Chr3:107521879-107524306 (+)
NOD/ShiLtJ	ENSMUSG00190039646	lncRNA gene	Chr3:105844717-105847144 (+)
NZO/HlLtJ	ENSMUSG00225021639	lncRNA gene	Chr3:110027907-110030341 (+)
PWK/PhJ	ENSLUMG00010024667	lncRNA gene	Chr3:104445961-104448389 (+)
SPRET/EiJ	ENSMSPG00010037392	lncRNA gene	Chr3:104946513-104948936 (+)
WSB/EiJ	ENSIUOG00005004698	lncRNA gene	Chr3:105159204-105161631 (+)

Homology

• Gene Tree
  Gm12500
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm12500
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000056411 (Evidence)
• NCBI Gene
  791415

Representative Sequences			Length	Strain/Species
genomic	791415	NCBI Gene Model | MGI Sequence Detail	2036	C57BL/6J
transcript	NM_001358018	RefSeq | MGI Sequence Detail	2065	C57BL/6
polypeptide	NP_001344947	RefSeq | MGI Sequence Detail	205	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm12500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31230	Chr3:107993345-107993371 (+)	66 bp