Gm12500 Gene Detail

Summary

• Symbol
  Gm12500
• Name
  predicted gene 12500

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3650304
  NCBI Gene: 791415
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:107993292-107995327 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.83 cM

Strain
Comparison

• SNPs within 2kb
  14 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650304	protein coding gene	Chr3:107992900-107995327 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003814	antisense lncRNA gene	Chr3:109618182-109620609 (+)
A/J	MGP_AJ_G0003794	antisense lncRNA gene	Chr3:106143181-106145608 (+)
AKR/J	MGP_AKRJ_G0003770	antisense lncRNA gene	Chr3:108729980-108732407 (+)
BALB/cJ	MGP_BALBcJ_G0003781	antisense lncRNA gene	Chr3:105846669-105849096 (+)
C3H/HeJ	MGP_C3HHeJ_G0003728	antisense lncRNA gene	Chr3:109070697-109073124 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003923	antisense lncRNA gene	Chr3:113711688-113714115 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003426	antisense lncRNA gene	Chr3:102296260-102298687 (+)
CAST/EiJ	MGP_CASTEiJ_G0003692	antisense lncRNA gene	Chr3:108450407-108452835 (+)
CBA/J	MGP_CBAJ_G0003722	antisense lncRNA gene	Chr3:117578804-117581231 (+)
DBA/2J	MGP_DBA2J_G0003734	antisense lncRNA gene	Chr3:105326513-105328940 (+)
FVB/NJ	MGP_FVBNJ_G0003755	antisense lncRNA gene	Chr3:103213298-103215725 (+)
LP/J	MGP_LPJ_G0003816	antisense lncRNA gene	Chr3:111037212-111039639 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003742	antisense lncRNA gene	Chr3:123650260-123652687 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003924	antisense lncRNA gene	Chr3:108322945-108325379 (+)
PWK/PhJ	MGP_PWKPhJ_G0003648	antisense lncRNA gene	Chr3:105074869-105077410 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003592	antisense lncRNA gene	Chr3:106458037-106460460 (+)
WSB/EiJ	MGP_WSBEiJ_G0003728	antisense lncRNA gene	Chr3:108853205-108855632 (+)

Homology

• Gene Tree
  Gm12500
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm12500
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000056411 (Evidence)
• NCBI Gene
  791415

Representative Sequences			Length	Strain/Species
genomic	791415	NCBI Gene Model | MGI Sequence Detail	2036	C57BL/6J
transcript	NM_001358018	RefSeq | MGI Sequence Detail	2065	C57BL/6
polypeptide	NP_001344947	RefSeq | MGI Sequence Detail	205	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm12500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31230	Chr3:107993345-107993371 (+)	66 bp