Gm11816 Gene Detail

Summary

• Symbol
  Gm11816
• Name
  predicted gene 11816

• Feature Type
  lncRNA gene
• IDs
  MGI:3650294
  NCBI Gene: 102638175
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:9280064-9287391 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 4.09 cM

Strain
Comparison

• SNPs within 2kb
  346 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650294	lncRNA gene	Chr4:9279258-9287391 (-)
129S1/SvImJ	ENSMUSG00200001646	lncRNA gene	Chr4:5895379-5900054 (-)
A/J	ENSMUSG00195002966	lncRNA gene	Chr4:6316808-6321519 (-)
AKR/J	ENSMUSG00220001456	lncRNA gene	Chr4:6098782-6103445 (-)
BALB/cJ	ENSMUSG00180004815	lncRNA gene	Chr4:5881021-5885696 (-)
C3H/HeJ	ENSMUSG00175018044	lncRNA gene	Chr4:6403571-6408250 (-)
C57BL/6NJ	ENSMUSG00215004657	lncRNA gene	Chr4:6024996-6029680 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003481	antisense lncRNA gene	Chr4:5442869-5446315 (-)
CAST/EiJ	ENSTCUG00005027063	lncRNA gene	Chr4:6136085-6140713 (-)
CBA/J	ENSMUSG00210002763	lncRNA gene	Chr4:6144468-6149147 (-)
DBA/2J	ENSMUSG00185002821	lncRNA gene	Chr4:6263878-6268557 (-)
FVB/NJ	ENSMUSG00205003737	lncRNA gene	Chr4:5914993-5919670 (-)
JF1/MsJ	ENSUMUG00000003481	lncRNA gene	Chr4:6363189-6367882 (-)
LP/J	ENSMUSG00230008479	lncRNA gene	Chr4:9431025-9435700 (-)
NOD/ShiLtJ	ENSMUSG00190014408	lncRNA gene	Chr4:5967741-5972452 (-)
NZO/HlLtJ	ENSMUSG00225008434	lncRNA gene	Chr4:13437359-13442022 (-)
PWK/PhJ	ENSLUMG00010005999	lncRNA gene	Chr4:5851969-5856630 (-)
SPRET/EiJ	ENSMSPG00010003148	lncRNA gene	Chr4:6178921-6183687 (-)
WSB/EiJ	ENSIUOG00005014648	lncRNA gene	Chr4:5928629-5933309 (-)

Homology

• Gene Tree
  Gm11816
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  5

• Ensembl
  ENSMUSG00000086233 (Evidence)
• NCBI Gene
  102638175

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086233	Ensembl Gene Model | MGI Sequence Detail	7328	C57BL/6J
transcript	ENSMUST00000287909	Ensembl | MGI Sequence Detail	2489	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm11816:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40896	Chr4:9287317-9287350 (-)	57 bp