Gm13061 Gene Detail

Summary

• Symbol
  Gm13061
• Name
  predicted gene 13061

• Feature Type
  lncRNA gene
• IDs
  MGI:3650259
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:133745440-133748229 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 66.50 cM

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650259	lncRNA gene	Chr4:133745440-133748229 (+)
129S1/SvImJ	ENSMUSG00200021206	lncRNA gene	Chr4:127177518-127179220 (+)
A/J	ENSMUSG00195044515	lncRNA gene	Chr4:128518587-128520289 (+)
AKR/J	ENSMUSG00220047990	lncRNA gene	Chr4:127510399-127512102 (+)
BALB/cJ	ENSMUSG00180049025	lncRNA gene	Chr4:126157342-126159044 (+)
C3H/HeJ	ENSMUSG00175048355	lncRNA gene	Chr4:127169814-127171516 (+)
C57BL/6NJ	ENSMUSG00215052727	lncRNA gene	Chr4:128684026-128685748 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013707	unclassified non-coding RNA gene	Chr4:123670693-123672387 (+)
CAST/EiJ	ENSTCUG00005048341	lncRNA gene	Chr4:128074687-128076400 (+)
CBA/J	ENSMUSG00210053965	lncRNA gene	Chr4:126793544-126795246 (+)
DBA/2J	ENSMUSG00185053641	lncRNA gene	Chr4:128330837-128332537 (+)
FVB/NJ	ENSMUSG00205048392	lncRNA gene	Chr4:126565457-126567163 (+)
JF1/MsJ	ENSUMUG00000049065	lncRNA gene	Chr4:128999758-129001484 (+)
LP/J	ENSMUSG00230038605	lncRNA gene	Chr4:132115853-132117555 (+)
NOD/ShiLtJ	ENSMUSG00190049156	lncRNA gene	Chr4:126563184-126564884 (+)
NZO/HlLtJ	ENSMUSG00225026966	lncRNA gene	Chr4:138044225-138045947 (+)
PWK/PhJ	ENSLUMG00010050163	lncRNA gene	Chr4:126009052-126010752 (+)
SPRET/EiJ	ENSMSPG00010046734	lncRNA gene	Chr4:128078579-128080267 (+)
WSB/EiJ	ENSIUOG00005043655	lncRNA gene	Chr4:126447331-126449028 (+)

Homology

• Gene Tree
  Gm13061
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  2
• Gene trapped
  5
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm13061
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000087288 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087288	Ensembl Gene Model | MGI Sequence Detail	2790	C57BL/6J
transcript	ENSMUST00000137962	Ensembl | MGI Sequence Detail	1731	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm13061:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39510	Chr4:133746750-133746761 (+)	1,316 bp