Gm11309 Gene Detail

Summary

• Symbol
  Gm11309
• Name
  predicted gene 11309

• Feature Type
  lncRNA gene
• IDs
  MGI:3650169
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:22875469-22899157 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 9.04 cM

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650169	lncRNA gene	Chr13:22875469-22899157 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003174	antisense lncRNA gene	Chr13:20044062-20044871 (+)
A/J	MGP_AJ_G0003147	antisense lncRNA gene	Chr13:19631701-19632510 (+)
AKR/J	MGP_AKRJ_G0003130	antisense lncRNA gene	Chr13:19914842-19915653 (+)
BALB/cJ	MGP_BALBcJ_G0003136	antisense lncRNA gene	Chr13:19750350-19751161 (+)
C3H/HeJ	MGP_C3HHeJ_G0003091	antisense lncRNA gene	Chr13:19891611-19892416 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003279	antisense lncRNA gene	Chr13:20724079-20753788 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003060	antisense lncRNA gene	Chr13:19792624-19822120 (+)
CBA/J	MGP_CBAJ_G0003087	antisense lncRNA gene	Chr13:21560328-21561137 (+)
DBA/2J	MGP_DBA2J_G0003093	antisense lncRNA gene	Chr13:19231910-19232721 (+)
FVB/NJ	MGP_FVBNJ_G0003112	antisense lncRNA gene	Chr13:18847875-18848686 (+)
LP/J	MGP_LPJ_G0003169	antisense lncRNA gene	Chr13:20239907-20264647 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003101	antisense lncRNA gene	Chr13:21929250-21930061 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0003018	antisense lncRNA gene	Chr13:19454661-19455472 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002963	antisense lncRNA gene	Chr13:18595982-18596787 (+)
WSB/EiJ	MGP_WSBEiJ_G0003091	antisense lncRNA gene	Chr13:19724831-19744828 (+)

Homology

• Gene Tree
  Gm11309
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm11309
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000085221 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085221	Ensembl Gene Model | MGI Sequence Detail	23689	C57BL/6J
transcript	ENSMUST00000127108	Ensembl | MGI Sequence Detail	613	Not Applicable

References

• Summaries
  All 12

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44