Gm12899 Pseudogene Detail

Summary

• Symbol
  Gm12899
• Name
  predicted gene 12899

• Feature Type
  pseudogene
• IDs
  MGI:3650162
  NCBI Gene: 100417388
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:107545325-107545875 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 50.18 cM

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650162	pseudogene	Chr4:107545325-107545906 (+)
129S1/SvImJ	ENSMUSG00200050009	pseudogene	Chr4:102596695-102597245 (+)
A/J	ENSMUSG00195047328	pseudogene	Chr4:103139590-103140140 (+)
AKR/J	ENSMUSG00220012752	pseudogene	Chr4:102539779-102540329 (+)
BALB/cJ	ENSMUSG00180047090	pseudogene	Chr4:101976380-101976930 (+)
C3H/HeJ	ENSMUSG00175040821	pseudogene	Chr4:102980832-102981382 (+)
C57BL/6NJ	ENSMUSG00215032850	pseudogene	Chr4:102877430-102877980 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011382	pseudogene	Chr4:99765520-99765989 (+)
CAST/EiJ	ENSTCUG00005007622	pseudogene	Chr4:102083616-102084135 (+)
CBA/J	ENSMUSG00210053246	pseudogene	Chr4:102613913-102614463 (+)
DBA/2J	ENSMUSG00185050366	pseudogene	Chr4:103325328-103325878 (+)
FVB/NJ	ENSMUSG00205016367	pseudogene	Chr4:101551242-101551792 (+)
JF1/MsJ	ENSUMUG00000049275	pseudogene	Chr4:103330228-103330778 (+)
LP/J	ENSMUSG00230009561	pseudogene	Chr4:106633139-106633689 (+)
NOD/ShiLtJ	ENSMUSG00190047122	pseudogene	Chr4:101983681-101984231 (+)
NZO/HlLtJ	ENSMUSG00225032919	pseudogene	Chr4:111743903-111744453 (+)
PWK/PhJ	ENSLUMG00010047367	pseudogene	Chr4:101052083-101052664 (+)
SPRET/EiJ	ENSMSPG00010031532	pseudogene	Chr4:103294433-103294953 (+)
WSB/EiJ	ENSIUOG00005045031	pseudogene	Chr4:102190454-102191004 (+)

Homology

• Gene Tree
  Gm12899
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12899
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000081916 (Evidence)
• NCBI Gene
  100417388

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081916	Ensembl Gene Model | MGI Sequence Detail	551	C57BL/6J
transcript	ENSMUST00000120565	Ensembl | MGI Sequence Detail	551	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12899:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38260	Chr4:107545686-107545690 (+)	363 bp