Gm12497 Pseudogene Detail

Summary

• Symbol
  Gm12497
• Name
  predicted pseudogene 12497

• Feature Type
  pseudogene
• IDs
  MGI:3650111
  NCBI Gene: 624701
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:107886948-107887184 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.83 cM

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650111	pseudogene	Chr3:107886901-107887270 (+)
129S1/SvImJ	ENSMUSG00200036106	pseudogene	Chr3:104502929-104503165 (+)
A/J	ENSMUSG00195025860	pseudogene	Chr3:104929354-104929590 (+)
AKR/J	ENSMUSG00220034037	pseudogene	Chr3:103292979-103293215 (+)
BALB/cJ	ENSMUSG00180020245	pseudogene	Chr3:104880019-104880255 (+)
C3H/HeJ	ENSMUSG00175031098	pseudogene	Chr3:104409478-104409714 (+)
C57BL/6NJ	ENSMUSG00215033366	pseudogene	Chr3:105137341-105137577 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012144	pseudogene	Chr7:33673324-33673562 (-)
CAST/EiJ	ENSTCUG00005027873	pseudogene	Chr3:105414132-105414368 (+)
CBA/J	ENSMUSG00210009140	pseudogene	Chr3:105031336-105031572 (+)
DBA/2J	ENSMUSG00185022785	pseudogene	Chr3:105500673-105500909 (+)
FVB/NJ	ENSMUSG00205032861	pseudogene	Chr3:104064481-104064717 (+)
JF1/MsJ	ENSUMUG00000005182	pseudogene	Chr3:104470013-104470249 (+)
LP/J	ENSMUSG00230021150	pseudogene	Chr3:107415927-107416163 (+)
NOD/ShiLtJ	ENSMUSG00190040656	pseudogene	Chr3:105738757-105738993 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010024771	pseudogene	Chr3:104332930-104333166 (+)
SPRET/EiJ	ENSMSPG00010037499	pseudogene	Chr3:104846881-104847117 (+)
WSB/EiJ	ENSIUOG00005004734	pseudogene	Chr3:105053194-105053430 (+)

Homology

• Gene Tree
  Gm12497
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm12497
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000049231 (Evidence)
• NCBI Gene
  624701

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000049231	Ensembl Gene Model | MGI Sequence Detail	237	C57BL/6J
transcript	ENSMUST00000138778	Ensembl | MGI Sequence Detail	237	Not Applicable

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:286217 Xiang Z, et al., Mice lacking three Loci encoding 14 glutathione transferase genes: a novel tool for assigning function to the GSTP, GSTM, and GSTT families. Drug Metab Dispos. 2014 Jun;42(6):1074-83
• Latest
  J:281737 Behrens KA, et al., Beyond detoxification: Pleiotropic functions of multiple glutathione S-transferase isoforms protect mice against a toxic electrophile. PLoS One. 2019;14(11):e0225449

TSS for Gm12497:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31229	Chr3:107886916-107886929 (+)	-25 bp