Gm12216 Gene Detail

Summary

• Symbol
  Gm12216
• Name
  predicted gene 12216

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3650088
  NCBI Gene: 622459
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:53676315-53750082 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 32.00 cM

Strain
Comparison

• SNPs within 2kb
  476 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650088	protein coding gene	Chr11:53674244-53750082 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0018306	protein coding gene	Chr11:53201782-53282616 (-)
A/J	MGP_AJ_G0018275	protein coding gene	Chr11:51189425-51264836 (-)
AKR/J	MGP_AKRJ_G0018245	protein coding gene	Chr11:52870740-52958744 (-)
BALB/cJ	MGP_BALBcJ_G0018246	protein coding gene	Chr11:51546077-51626226 (-)
C3H/HeJ	MGP_C3HHeJ_G0018057	protein coding gene	Chr11:52840370-52930942 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0018698	protein coding gene	Chr11:54805971-54892178 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016348	protein coding gene	Chr11:48720227-48794255 (-)
CAST/EiJ	MGP_CASTEiJ_G0017622	protein coding gene	Chr11:52882402-52963731 (-)
CBA/J	MGP_CBAJ_G0018032	protein coding gene	Chr11:57413510-57500490 (-)
DBA/2J	MGP_DBA2J_G0018142	protein coding gene	Chr11:50936605-51018184 (-)
FVB/NJ	MGP_FVBNJ_G0018134	protein coding gene	Chr11:50580489-50657657 (-)
LP/J	MGP_LPJ_G0018216	protein coding gene	Chr11:53652179-53730490 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0018158	protein coding gene	Chr11:58688921-58772170 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018740	protein coding gene	Chr11:52901343-52984901 (-)
PWK/PhJ	MGP_PWKPhJ_G0017397	protein coding gene	Chr11:51455378-51524537 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0017192	protein coding gene	Chr11:52689705-52762638 (-)
WSB/EiJ	MGP_WSBEiJ_G0017669	protein coding gene	Chr11:52539780-52623655 (-)

Homology

• Gene Tree
  Gm12216
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  3
• Targeted
  1
• Genomic Mutations
  2 involving Gm12216
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• Gm12216 interacts with 97 markers (Mir17, Mir20a, Mir20b, ...) View All

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1
• UniProt
  4

• Ensembl
  ENSMUSG00000081769 (Evidence)
• NCBI Gene
  622459

Representative Sequences			Length	Strain/Species
genomic	622459	NCBI Gene Model | MGI Sequence Detail	73768	C57BL/6J
transcript	NR_033332	RefSeq | MGI Sequence Detail	1152	C57BL/6
polypeptide	A0A1W2P827	UniProt | EBI | MGI Sequence Detail	62	Not Applicable

Protein
Information

• UniProt
  4 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2136253

References

• Summaries
  All 19

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm12216:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107961	Chr11:53750013-53750067 (-)	42 bp
Tssr107960	Chr11:53728474-53728483 (-)	21,603 bp
Tssr107959	Chr11:53709558-53709566 (-)	40,520 bp
Tssr107958	Chr11:53695975-53695985 (-)	54,102 bp