Rpl36-ps2 Pseudogene Detail

Summary

• Symbol
  Rpl36-ps2
• Name
  ribosomal protein L36, pseudogene 2
• Synonyms
  Gm12342

• Feature Type
  pseudogene
• IDs
  MGI:3650081
  NCBI Gene: 100043483
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:76492145-76492455 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 45.92 cM

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650081	pseudogene	Chr11:76492107-76492503 (+)
129S1/SvImJ	ENSMUSG00200052148	pseudogene	Chr11:73614300-73614620 (+)
A/J	ENSMUSG00195045543	pseudogene	Chr11:73492779-73493099 (+)
AKR/J	ENSMUSG00220048588	pseudogene	Chr11:73707992-73708312 (+)
BALB/cJ	ENSMUSG00180043922	pseudogene	Chr11:73681232-73681552 (+)
C3H/HeJ	ENSMUSG00175040637	pseudogene	Chr11:73651104-73651424 (+)
C57BL/6NJ	ENSMUSG00215041926	pseudogene	Chr11:73268670-73268980 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210047513	pseudogene	Chr11:73469552-73469872 (+)
DBA/2J	ENSMUSG00185040434	pseudogene	Chr11:73739539-73739859 (+)
FVB/NJ	ENSMUSG00205046447	pseudogene	Chr11:73576172-73576492 (+)
JF1/MsJ	ENSUMUG00000032654	pseudogene	Chr4:38363571-38363891 (+)
JF1/MsJ	ENSUMUG00000054014	pseudogene	Chr11:74110818-74111138 (+)
JF1/MsJ	ENSUMUG00000025903	pseudogene	Chr13:18280372-18280692 (+)
JF1/MsJ	ENSUMUG00000041561	pseudogene	Chr19:29704774-29705094 (+)
JF1/MsJ	ENSUMUG00000058098	pseudogene	Chr17:26373173-26373493 (-)
LP/J	ENSMUSG00230049526	pseudogene	Chr11:74770134-74770454 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225039870	pseudogene	Chr11:76930186-76930496 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005037371	pseudogene	Chr11:73632293-73632603 (+)

Homology

• Gene Tree
  Rpl36-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl36-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000024205 (Evidence)
• NCBI Gene
  100043483

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000024205	Ensembl Gene Model | MGI Sequence Detail	311	C57BL/6J
transcript	ENSMUST00000136893	Ensembl | MGI Sequence Detail	311	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Rpl36-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103096	Chr11:76492105-76492109 (+)	-38 bp