Gm11946 Gene Detail

Summary

• Symbol
  Gm11946
• Name
  predicted gene 11946

• Feature Type
  lncRNA gene
• IDs
  MGI:3650071
  NCBI Gene: 102637250
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:3480157-3486856 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.48 cM

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650071	lncRNA gene	Chr11:3480157-3496570 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015148	unclassified non-coding RNA gene	Chr11:404377-411070 (+)
A/J	MGP_AJ_G0015122	unclassified non-coding RNA gene	Chr11:447745-454444 (+)
AKR/J	MGP_AKRJ_G0015085	unclassified non-coding RNA gene	Chr11:465632-472331 (+)
BALB/cJ	MGP_BALBcJ_G0015085	unclassified non-coding RNA gene	Chr11:420702-427401 (+)
C3H/HeJ	MGP_C3HHeJ_G0014908	unclassified non-coding RNA gene	Chr11:403996-410695 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015541	unclassified non-coding RNA gene	Chr11:478374-485073 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013287	unclassified non-coding RNA gene	Chr11:357013-363681 (+)
CAST/EiJ	MGP_CASTEiJ_G0014462	unclassified non-coding RNA gene	Chr11:358416-365201 (+)
CBA/J	MGP_CBAJ_G0014887	unclassified non-coding RNA gene	Chr11:641433-648132 (+)
DBA/2J	MGP_DBA2J_G0014980	unclassified non-coding RNA gene	Chr11:366343-373042 (+)
FVB/NJ	MGP_FVBNJ_G0014991	unclassified non-coding RNA gene	Chr11:398050-404753 (+)
LP/J	MGP_LPJ_G0015062	unclassified non-coding RNA gene	Chr11:502155-508854 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015018	unclassified non-coding RNA gene	Chr11:387305-394004 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015580	unclassified non-coding RNA gene	Chr11:478893-485592 (+)
PWK/PhJ	MGP_PWKPhJ_G0014254	unclassified non-coding RNA gene	Chr11:341731-348451 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014042	unclassified non-coding RNA gene	Chr11:432623-439213 (+)
WSB/EiJ	MGP_WSBEiJ_G0014565	unclassified non-coding RNA gene	Chr11:354371-361070 (+)

Homology

• Gene Tree
  Gm11946
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  12

• Ensembl
  ENSMUSG00000087291 (Evidence)
• NCBI Gene
  102637250

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087291	Ensembl Gene Model | MGI Sequence Detail	6700	C57BL/6J
transcript	ENSMUST00000123459	Ensembl | MGI Sequence Detail	3941	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm11946:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3410	Chr11:3479999-3480009 (+)	-153 bp
Tssr100060	Chr11:3480228-3480239 (+)	77 bp
Tssr100061	Chr11:3480908-3480927 (+)	761 bp
Tssr100062	Chr11:3480932-3480959 (+)	789 bp
Tssr100063	Chr11:3481686-3481689 (+)	1,531 bp