Gm11946 Gene Detail

Summary

• Symbol
  Gm11946
• Name
  predicted gene 11946

• Feature Type
  lncRNA gene
• IDs
  MGI:3650071
  NCBI Gene: 102637250
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:3480140-3486858 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.48 cM

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650071	lncRNA gene	Chr11:3480140-3496570 (+)
129S1/SvImJ	ENSMUSG00200034700	lncRNA gene	Chr11:433336-440035 (+)
A/J	ENSMUSG00195024056	lncRNA gene	Chr11:340685-347384 (+)
AKR/J	ENSMUSG00220008963	lncRNA gene	Chr11:353896-360595 (+)
BALB/cJ	ENSMUSG00180029346	lncRNA gene	Chr11:363692-370391 (+)
C3H/HeJ	ENSMUSG00175010284	lncRNA gene	Chr11:353398-360097 (+)
C57BL/6NJ	ENSMUSG00215030679	lncRNA gene	Chr11:363739-370438 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013287	unclassified non-coding RNA gene	Chr11:357013-363681 (+)
CAST/EiJ	ENSTCUG00005040509	lncRNA gene	Chr11:453794-460585 (+)
CBA/J	ENSMUSG00210018568	lncRNA gene	Chr11:353036-359735 (+)
DBA/2J	ENSMUSG00185018251	lncRNA gene	Chr11:450759-457458 (+)
FVB/NJ	ENSMUSG00205035829	lncRNA gene	Chr11:324077-330780 (+)
JF1/MsJ	ENSUMUG00000049161	lncRNA gene	Chr11:606785-613477 (+)
LP/J	ENSMUSG00230036078	lncRNA gene	Chr11:1516520-1523219 (+)
NOD/ShiLtJ	ENSMUSG00190038962	lncRNA gene	Chr11:340579-347278 (+)
NZO/HlLtJ	ENSMUSG00225026341	lncRNA gene	Chr11:3573641-3580340 (+)
PWK/PhJ	ENSLUMG00010019347	lncRNA gene	Chr11:337935-344627 (+)
SPRET/EiJ	ENSMSPG00010008737	lncRNA gene	Chr11:427040-433634 (+)
WSB/EiJ	ENSIUOG00005007823	lncRNA gene	Chr11:354502-361201 (+)

Homology

• Gene Tree
  Gm11946
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  12

• Ensembl
  ENSMUSG00000087291 (Evidence)
• NCBI Gene
  102637250

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087291	Ensembl Gene Model | MGI Sequence Detail	6719	C57BL/6J
transcript	ENSMUST00000123459	Ensembl | MGI Sequence Detail	3941	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm11946:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3410	Chr11:3479999-3480009 (+)	-136 bp
Tssr100060	Chr11:3480228-3480239 (+)	94 bp
Tssr100061	Chr11:3480908-3480927 (+)	778 bp
Tssr100062	Chr11:3480932-3480959 (+)	806 bp
Tssr100063	Chr11:3481686-3481689 (+)	1,548 bp